Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   U5897_RS14685 Genome accession   NZ_CP142393
Coordinates   3046740..3047150 (+) Length   136 a.a.
NCBI ID   WP_001200146.1    Uniprot ID   A0AAQ0VHX0
Organism   Acinetobacter baumannii strain 38     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3041740..3052150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS14650 (U5897_14650) - 3042207..3043313 (+) 1107 WP_000286343.1 muconate/chloromuconate family cycloisomerase -
  U5897_RS14655 (U5897_14655) catC 3043337..3043627 (+) 291 WP_000897235.1 muconolactone Delta-isomerase -
  U5897_RS14660 (U5897_14660) catA 3043788..3044708 (+) 921 WP_001081618.1 catechol 1,2-dioxygenase -
  U5897_RS14665 (U5897_14665) - 3044843..3045262 (+) 420 Protein_2866 3-oxoacid CoA-transferase subunit A -
  U5897_RS14670 (U5897_14670) - 3045263..3045379 (+) 117 Protein_2867 transposase domain-containing protein -
  U5897_RS14675 (U5897_14675) - 3045413..3045853 (-) 441 Protein_2868 SDR family NAD(P)-dependent oxidoreductase -
  U5897_RS14680 (U5897_14680) mazG 3045965..3046771 (+) 807 WP_000359485.1 nucleoside triphosphate pyrophosphohydrolase -
  U5897_RS14685 (U5897_14685) comEA 3046740..3047150 (+) 411 WP_001200146.1 ComEA family DNA-binding protein Machinery gene
  U5897_RS14690 (U5897_14690) pcnB 3047275..3048738 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  U5897_RS14695 (U5897_14695) folK 3048735..3049217 (+) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  U5897_RS14700 (U5897_14700) panB 3049263..3050072 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  U5897_RS14705 (U5897_14705) panC 3050076..3050924 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  U5897_RS14710 (U5897_14710) rapZ 3050947..3051798 (+) 852 WP_000821671.1 RNase adapter RapZ -
  U5897_RS14715 (U5897_14715) - 3051795..3052064 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15715.03 Da        Isoelectric Point: 10.4475

>NTDB_id=925723 U5897_RS14685 WP_001200146.1 3046740..3047150(+) (comEA) [Acinetobacter baumannii strain 38]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=925723 U5897_RS14685 WP_001200146.1 3046740..3047150(+) (comEA) [Acinetobacter baumannii strain 38]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412