Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AB5J54_RS13190 Genome accession   NZ_CP163444
Coordinates   2843203..2844219 (-) Length   338 a.a.
NCBI ID   WP_369144113.1    Uniprot ID   -
Organism   Streptomyces sp. R44     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2838203..2849219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS13180 (AB5J54_13180) rcrP 2839545..2841278 (+) 1734 WP_369144111.1 ABC transporter ATP-binding protein Regulator
  AB5J54_RS13185 (AB5J54_13185) rcrQ 2841278..2843206 (+) 1929 WP_369144112.1 ABC transporter ATP-binding protein Regulator
  AB5J54_RS13190 (AB5J54_13190) rpoS 2843203..2844219 (-) 1017 WP_369144113.1 RNA polymerase sigma factor Regulator
  AB5J54_RS13195 (AB5J54_13195) dnaG 2844334..2846226 (-) 1893 WP_369144114.1 DNA primase -
  AB5J54_RS13200 (AB5J54_13200) - 2846256..2847515 (-) 1260 WP_369144115.1 NAD(P)/FAD-dependent oxidoreductase -
  AB5J54_RS13205 (AB5J54_13205) - 2847633..2848961 (-) 1329 WP_369144116.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38284.63 Da        Isoelectric Point: 5.4128

>NTDB_id=925608 AB5J54_RS13190 WP_369144113.1 2843203..2844219(-) (rpoS) [Streptomyces sp. R44]
MQTEIQTTRTTEPDEPPELPEIPVQRRRTGDPGGNGPSSDLFRQYLREIGRIPLLSAEEEVELARRVEAGLFAEEKLANT
PDLDSRLAGDLDRLVVLGRIAKRKLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW
IRQAMSRALADQARTIRVPVHVVELINRVIRVQRRMLQERGYEPTAEEVAAQLDLAPERVGEVLRLAQEPVSLHAPVGEE
EDVALGDLIEDGDAASPVESAAFLLLRRHLEDVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKT
LNKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=925608 AB5J54_RS13190 WP_369144113.1 2843203..2844219(-) (rpoS) [Streptomyces sp. R44]
GTGCAGACCGAGATCCAGACGACCAGGACCACCGAACCGGACGAGCCGCCCGAACTCCCCGAGATACCCGTCCAGCGCCG
CCGCACCGGCGACCCCGGCGGCAACGGCCCCTCCTCCGACCTCTTCCGCCAGTACCTGCGCGAGATCGGCCGCATCCCGC
TGCTCAGCGCCGAGGAGGAGGTCGAACTCGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAGAAACTCGCCAACACC
CCCGACCTGGACAGCCGGCTGGCGGGCGATCTGGACCGGCTCGTCGTCCTCGGCCGGATCGCCAAGCGCAAGCTCATCGA
GGCCAACCTCCGCCTCGTCGTCTCCGTCGCCAAACGGTACGTGGGCCGCGGCCTCACCATGCTGGACCTCGTCCAGGAGG
GAAACCTCGGCCTCATCAGGGCCGTCGAGAAGTTCGACTACGCGCGCGGCTACAAGTTCTCCACGTACGCGACCTGGTGG
ATCCGCCAGGCCATGTCCCGGGCCCTCGCCGACCAGGCCCGGACCATCCGCGTCCCCGTGCACGTCGTCGAACTCATCAA
CCGGGTCATCCGCGTCCAGCGCCGCATGCTCCAGGAACGCGGCTACGAACCCACCGCCGAAGAGGTCGCCGCCCAGCTGG
ACCTGGCCCCCGAGCGGGTCGGCGAGGTCCTCCGCCTCGCCCAGGAACCCGTCTCCCTGCACGCCCCCGTCGGCGAGGAG
GAGGACGTCGCCCTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCGGCCGCCTTCCTGCTGCTCCG
CCGCCACCTGGAGGACGTCCTGTCCACCCTCGGCGAGCGCGAACGGAAGGTCGTCCAGCTCCGCTACGGCCTCGACGACG
GCAGGCCCCGCACCCTGGAGGAGATAGGACGCATCTTCGGCGTGACGCGCGAACGCATCCGCCAGATCGAGTCCAAGACC
CTCAACAAGCTGCGGGACCATGCCTACGCCGACCAGCTGCGCGGTTACCTCGACTAG

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(273-325)

Sigma-70 region 2 (Sigma70_r2)

(105-174)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(40-73)

Sigma-70 region 3 (Sigma70_r3)

(184-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.027

86.686

0.382