Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J54_RS13180 Genome accession   NZ_CP163444
Coordinates   2839545..2841278 (+) Length   577 a.a.
NCBI ID   WP_369144111.1    Uniprot ID   -
Organism   Streptomyces sp. R44     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2834545..2846278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS13145 (AB5J54_13145) - 2835606..2836049 (+) 444 WP_369144107.1 MmpS family transport accessory protein -
  AB5J54_RS13150 (AB5J54_13150) - 2836337..2836870 (-) 534 WP_369144108.1 hypothetical protein -
  AB5J54_RS13170 (AB5J54_13170) - 2837679..2837978 (+) 300 WP_369144109.1 YtxH domain-containing protein -
  AB5J54_RS13175 (AB5J54_13175) - 2838009..2839448 (+) 1440 WP_369144110.1 FGGY family carbohydrate kinase -
  AB5J54_RS13180 (AB5J54_13180) rcrP 2839545..2841278 (+) 1734 WP_369144111.1 ABC transporter ATP-binding protein Regulator
  AB5J54_RS13185 (AB5J54_13185) rcrQ 2841278..2843206 (+) 1929 WP_369144112.1 ABC transporter ATP-binding protein Regulator
  AB5J54_RS13190 (AB5J54_13190) rpoS 2843203..2844219 (-) 1017 WP_369144113.1 RNA polymerase sigma factor Regulator
  AB5J54_RS13195 (AB5J54_13195) dnaG 2844334..2846226 (-) 1893 WP_369144114.1 DNA primase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62700.94 Da        Isoelectric Point: 5.8000

>NTDB_id=925606 AB5J54_RS13180 WP_369144111.1 2839545..2841278(+) (rcrP) [Streptomyces sp. R44]
MLIRLLRTHLRPYRKPIALLVLLQFLQTCASLYLPTLNADIIDNGVVSGDTGYILRFGALMVGVSVVQVVCNIGAVYYGA
RTASALGRDVRGAVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLGVAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANGELTDVSMATGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDSQGMEIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTETSVVP
PAEPVTKLLRRGHLEVRNADFRYPGAEESVLRDVALVARPGETTAIIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVR
ELDPKLMAKTVGLVPQKPYLFSGTVATNLRYGKPDATDAELWHALEVAQAKDFVAKLEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYETDALLRAALSEETADSTVVIVAQRVSTIREADRIVVLDEGRVVGTGRHLELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=925606 AB5J54_RS13180 WP_369144111.1 2839545..2841278(+) (rcrP) [Streptomyces sp. R44]
GTGCTCATAAGACTTCTCCGAACCCACCTGCGGCCGTATCGAAAACCCATCGCCCTGCTCGTCCTGCTGCAGTTCCTGCA
GACCTGCGCGAGCCTCTACCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAGCGGGGACACCGGCTACA
TCCTGCGCTTCGGCGCCCTGATGGTCGGCGTCTCCGTCGTCCAGGTCGTCTGCAACATCGGGGCCGTGTACTACGGCGCG
CGCACCGCCTCCGCGCTCGGCCGTGACGTGCGCGGCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGGGAGCTCGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGCACGACCAATGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGGCGTTCA
CCCTGATGGTCTCGGCGCCCATCATGTGCGTCGGCGGCATCGTGATGGCCCTCGGCCAGGACGTCCCCCTGTCGGGCGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCGTCGCCGTCTCGCTGATCGTGCGGAAGATGCGGCCGCTCTTCCGGACCATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGGGACG
GGTACGAGGAAGAGCGCTTCCGCGGCGCCAACGGCGAGCTGACCGACGTGTCGATGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACGGTGATGACCGTCGTGAACGTCTCCAGCGTGGCCGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCCA
GGGGATGGAGATCGGCGCGCTGACCGCCTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCGGAGCGCATCGAGGAGGTCCTGGGGACGGAGACGAGCGTCGTGCCG
CCGGCCGAGCCGGTGACGAAGCTGCTGCGGCGCGGGCACCTGGAGGTCAGGAACGCGGACTTCCGGTACCCGGGCGCGGA
GGAGTCCGTCCTCAGGGACGTGGCGCTCGTCGCCCGGCCCGGTGAGACCACCGCGATCATCGGCTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTGGTGCCCCGGCTCTTCGACGCCACCGGCGGCGAGGTGCTCGTCGACGGGGTGGACGTGCGC
GAGCTCGACCCGAAGCTGATGGCGAAGACCGTGGGGCTCGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAAGCCCGACGCGACCGACGCGGAGCTCTGGCACGCCCTTGAGGTCGCCCAGGCCAAGGACTTCG
TGGCCAAGCTGGAGGGCGGTCTGAACGCCCCGATCGCGCAGGGCGGCACCAACGTGTCCGGTGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGAGACGGA
CGCCCTGCTCCGGGCCGCGCTCTCCGAGGAGACGGCGGACTCGACCGTGGTGATCGTCGCCCAGCGCGTGTCGACCATCC
GCGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGTGTGGTGGGCACCGGACGGCACCTGGAGCTGATGGCGGAGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.929

97.227

0.388