Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB5J54_RS13185 Genome accession   NZ_CP163444
Coordinates   2841278..2843206 (+) Length   642 a.a.
NCBI ID   WP_369144112.1    Uniprot ID   -
Organism   Streptomyces sp. R44     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2836278..2848206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS13150 (AB5J54_13150) - 2836337..2836870 (-) 534 WP_369144108.1 hypothetical protein -
  AB5J54_RS13170 (AB5J54_13170) - 2837679..2837978 (+) 300 WP_369144109.1 YtxH domain-containing protein -
  AB5J54_RS13175 (AB5J54_13175) - 2838009..2839448 (+) 1440 WP_369144110.1 FGGY family carbohydrate kinase -
  AB5J54_RS13180 (AB5J54_13180) rcrP 2839545..2841278 (+) 1734 WP_369144111.1 ABC transporter ATP-binding protein Regulator
  AB5J54_RS13185 (AB5J54_13185) rcrQ 2841278..2843206 (+) 1929 WP_369144112.1 ABC transporter ATP-binding protein Regulator
  AB5J54_RS13190 (AB5J54_13190) rpoS 2843203..2844219 (-) 1017 WP_369144113.1 RNA polymerase sigma factor Regulator
  AB5J54_RS13195 (AB5J54_13195) dnaG 2844334..2846226 (-) 1893 WP_369144114.1 DNA primase -
  AB5J54_RS13200 (AB5J54_13200) - 2846256..2847515 (-) 1260 WP_369144115.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69137.68 Da        Isoelectric Point: 5.7934

>NTDB_id=925607 AB5J54_RS13185 WP_369144112.1 2841278..2843206(+) (rcrQ) [Streptomyces sp. R44]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLLKQLAPERGPLWVMLIAGVLSVAASVVGPKILGKATDLIFAGVVGRNMPEGA
TKAQALEKLRASGDSGMADMLSGVDFTPGKGMDFGAIGEVLLWVLAIYVAAGLLMLVSTRMSIKVINRTVYRMREDVQTK
LARLPLSYFDKAKRGEVLSRATNDIDNISQTLQQSMGQLINSLLTIVGVLGMMIWISPLLALVAVVTVPVSVFVAAKIGK
RSQPHFVQQWKSTGTLNAHVEEMYTGHSLVKVFGRQEESARDFREQNEALYEAGFKAQFNSGVMQPVMFFVSNINYVLVA
VVGGLRVATGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEPDAPTSEKPVDLKGKVALE
GVSFRYEKDKPLIEDLSLTVDPGQTVAIVGPTGAGKTTLVNLLMRFYEVTDGRITLDGVDVAKMSREELRKGIGMVLQDT
WLFGGTIADNIAYGATRTVTRAEVEEAARAAHADRFIRTLPQGYDTVVEDDGAGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLSSGGAYARLYAAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=925607 AB5J54_RS13185 WP_369144112.1 2841278..2843206(+) (rcrQ) [Streptomyces sp. R44]
ATGGCCGGTCCTGGCGGACGCATGATGGCCGGTGGCGGCCCCGACCAGCGGTCGATGGACTTCAAGGGCTCGGGCAAGCG
GCTGCTCAAGCAGCTGGCGCCCGAGCGCGGCCCGCTCTGGGTGATGCTGATCGCCGGCGTGCTGTCGGTGGCGGCCTCCG
TGGTAGGGCCGAAGATCCTCGGCAAGGCGACGGACCTGATCTTCGCGGGCGTCGTCGGGCGGAACATGCCCGAGGGCGCC
ACGAAGGCCCAGGCCCTGGAGAAGCTGCGGGCCAGTGGCGACAGCGGCATGGCCGACATGCTGTCCGGGGTCGACTTCAC
CCCCGGCAAGGGCATGGACTTCGGCGCGATCGGCGAGGTCCTGCTGTGGGTCCTCGCGATCTACGTGGCGGCGGGCCTGC
TCATGCTGGTCTCCACCCGCATGTCGATCAAGGTGATCAACCGGACGGTCTACCGGATGCGGGAGGACGTCCAGACGAAG
CTGGCGCGGCTCCCCCTGTCGTACTTCGACAAGGCGAAGCGCGGCGAGGTGCTGTCGCGGGCGACCAACGACATCGACAA
CATCTCGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCGTCGGCGTGCTCGGGATGATGA
TCTGGATCTCGCCGCTGCTCGCCCTGGTGGCCGTGGTGACGGTGCCGGTCTCGGTGTTCGTCGCGGCGAAGATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGAAGTCGACCGGCACGCTCAACGCGCACGTGGAGGAGATGTACACCGGGCA
CAGCCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCCGCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGGTGATGTTCTTCGTCTCGAACATCAACTACGTCCTGGTGGCC
GTGGTCGGTGGTCTGCGGGTGGCGACCGGCAGCCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGTGTGGCCTCGGCGGAGCGGATCTTCGAGC
TGCTGGACGCGGAGGAGCAGGAGCCGGACGCGCCGACGAGCGAGAAGCCCGTGGACCTCAAGGGCAAGGTGGCGCTGGAG
GGCGTCTCCTTCCGGTACGAGAAGGACAAGCCGCTCATCGAGGACCTGTCCCTCACCGTGGACCCGGGCCAGACGGTCGC
GATCGTCGGTCCGACCGGCGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGAGGTGACGGACGGCCGGA
TCACCCTGGACGGGGTGGACGTCGCGAAGATGTCCCGCGAGGAGCTGCGCAAGGGCATCGGCATGGTCCTGCAGGACACC
TGGCTCTTCGGCGGCACCATCGCGGACAACATCGCGTACGGCGCCACGCGCACGGTGACCCGCGCCGAGGTCGAGGAGGC
GGCGCGCGCCGCGCACGCCGACCGGTTCATCCGGACCCTGCCCCAGGGCTACGACACGGTCGTCGAGGACGACGGGGCGG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTGGACGAG
GCCACCAGCTCGGTCGACACCCGCACCGAGGTCCTCATCCAGAAGGCGATGGCGCGCCTGGCCCACGGCCGGACGAGCTT
CGTCATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCGAACAGG
GCACGCACGAGGAGCTGTTGTCGTCCGGCGGGGCCTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.806

96.262

0.383