Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VP780_RS19000 Genome accession   NZ_CP142380
Coordinates   4115514..4117736 (-) Length   740 a.a.
NCBI ID   WP_327438469.1    Uniprot ID   -
Organism   Pseudomonas donghuensis strain ZF510     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4110514..4122736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP780_RS18965 (VP780_18965) murB 4110906..4111925 (-) 1020 WP_327438464.1 UDP-N-acetylmuramate dehydrogenase -
  VP780_RS18970 (VP780_18970) - 4111922..4112386 (-) 465 WP_327438465.1 low molecular weight protein-tyrosine-phosphatase -
  VP780_RS18975 (VP780_18975) kdsB 4112386..4113150 (-) 765 WP_327438466.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VP780_RS18980 (VP780_18980) - 4113147..4113332 (-) 186 WP_003247142.1 Trm112 family protein -
  VP780_RS18985 (VP780_18985) lpxK 4113370..4114380 (-) 1011 WP_327438467.1 tetraacyldisaccharide 4'-kinase -
  VP780_RS18990 (VP780_18990) - 4114380..4114811 (-) 432 WP_010223210.1 ExbD/TolR family protein -
  VP780_RS18995 (VP780_18995) exbB 4114808..4115443 (-) 636 WP_327438468.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VP780_RS19000 (VP780_19000) comA 4115514..4117736 (-) 2223 WP_327438469.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VP780_RS19005 (VP780_19005) - 4117880..4118422 (+) 543 WP_254286307.1 DUF2062 domain-containing protein -
  VP780_RS19010 (VP780_19010) - 4118390..4119169 (-) 780 WP_010223206.1 ABC transporter permease -
  VP780_RS19015 (VP780_19015) - 4119166..4120098 (-) 933 WP_010223205.1 ABC transporter ATP-binding protein -
  VP780_RS19020 (VP780_19020) - 4120253..4120876 (-) 624 WP_254286306.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80210.90 Da        Isoelectric Point: 9.9024

>NTDB_id=925603 VP780_RS19000 WP_327438469.1 4115514..4117736(-) (comA) [Pseudomonas donghuensis strain ZF510]
MRTGMLALALGLISLGFLPALPSVWVLVLLTVVGLSCLPSRLWPIGLFLLGLSWACVSAQSALDQRLAAELDGRTLWIEG
RVTGLPEQGARSVRFELSAGHSRRAQLPRRIQLSWFGGPAVNSGELWRLAVSLKRPSGLLNPHGPDQEASLLARRIGATG
SVKAGERLAPATAAWRDHLRQRLLAVDAQGREAALAALVLGDGGGLAREDWQALQATGTVHLLVISGQHVGLLAGLVYAL
IAGLARLGWWPPRLPWLPCACALALAAALVYGVLAGFQVPVQRACVMLAMVLLWRLRFRHLGVGLPLLLALNAVLLWEPL
ASLQPGFWLSFVAVAILIFTFSGRLGAWNPWLAWGRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPAAL
LGTLLLPVPYLGEGLLWLAGGLLDGLFRALAEAAVWRPAWLPAALPFWGWLLVCLGAFLLLLPRGLPMRALGWPLLLLAA
FAPRERVPEGQVEVWQLDVGQGLAFILRTRHHAMLYDAGPAMGDFDLGERVVLPSLHKLGVRQLDLMLLSHADADHAGGA
RAVQRGLPVLRVLSGEASALPAVLQAQSCGSGERWQWDGVNFSLWQWHDAGDSNQDSCVLLVEAQGEKLLLTGDLDARGE
RAWVRDWQAGQVDWLQSPHHGSRSSSSEALLNATAPRGVLISRGRYNAFGHPHPEVMARYRTHGIQAYDNVEHGALRLRL
GAFGEPEGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=925603 VP780_RS19000 WP_327438469.1 4115514..4117736(-) (comA) [Pseudomonas donghuensis strain ZF510]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGATCAGCCTCGGGTTTCTACCGGCTTTGCCGTCCGTCTGGGTACT
TGTCCTGCTGACAGTTGTCGGACTTTCCTGCTTGCCTTCGCGGCTCTGGCCAATCGGGCTGTTTCTGCTGGGGTTGAGCT
GGGCCTGTGTCTCGGCGCAATCGGCGCTGGACCAGCGTCTGGCGGCAGAACTCGATGGCCGTACCTTGTGGATTGAAGGC
CGGGTCACAGGCTTGCCGGAGCAGGGCGCGCGCTCGGTGCGCTTCGAGCTGAGCGCTGGCCACTCTCGCCGTGCGCAATT
GCCCCGGCGAATACAGCTCAGCTGGTTTGGCGGGCCAGCGGTCAACAGCGGCGAGCTTTGGCGATTGGCCGTCAGCCTCA
AGCGCCCCTCCGGTTTGCTCAATCCTCATGGTCCCGATCAGGAAGCGAGCCTGTTGGCCCGGCGTATCGGTGCCACCGGC
AGCGTCAAGGCCGGCGAGCGCCTGGCACCGGCGACAGCGGCCTGGCGCGATCACCTGCGCCAGCGCTTGTTGGCTGTGGA
TGCCCAAGGCCGGGAGGCGGCGCTGGCCGCGCTGGTATTGGGTGATGGCGGCGGGTTGGCGCGCGAAGACTGGCAGGCGT
TGCAGGCAACCGGTACGGTGCACTTGCTGGTGATCTCTGGCCAGCATGTGGGGCTGCTGGCCGGGTTGGTGTATGCCTTG
ATTGCCGGGCTAGCGCGCCTTGGCTGGTGGCCGCCAAGGCTGCCCTGGTTGCCTTGTGCCTGTGCGCTGGCACTTGCCGC
CGCCCTGGTCTACGGCGTGCTGGCCGGTTTTCAGGTGCCGGTGCAGCGTGCCTGCGTGATGCTGGCCATGGTGCTGCTCT
GGCGCCTGCGTTTTCGCCATCTGGGCGTTGGCTTGCCGCTGTTGCTGGCGCTGAATGCGGTGTTGCTGTGGGAGCCGCTG
GCCAGCTTGCAGCCGGGCTTCTGGTTATCGTTCGTGGCCGTGGCGATTCTGATCTTTACCTTCAGCGGCCGCCTTGGCGC
CTGGAACCCGTGGCTGGCCTGGGGGCGCGCCCAGTGGTTGATCGCCATCGGCTTGTTGCCGGTGTTGCTTGCGCAAGGTT
TGCCGGTGAGCCTGACGGCACCGCTGATCAACCTGCTGGCGGTGCCGTGGATCAGCCTTGCGGTGTTGCCGGCGGCGTTG
CTCGGCACCCTGTTGCTGCCAGTGCCGTACCTGGGGGAGGGGCTGTTGTGGCTGGCCGGCGGCTTGCTCGACGGTTTGTT
CCGGGCGTTGGCAGAAGCCGCTGTCTGGCGCCCGGCCTGGCTGCCTGCGGCACTGCCTTTCTGGGGCTGGCTGCTGGTGT
GCCTGGGGGCGTTCCTGCTGCTGTTGCCGCGCGGCTTGCCGATGCGCGCCCTCGGCTGGCCTTTGTTGCTGCTGGCGGCA
TTTGCGCCACGGGAGCGCGTACCCGAGGGCCAGGTGGAGGTCTGGCAACTGGATGTCGGCCAGGGGCTGGCGTTCATCTT
GCGCACCCGTCACCACGCCATGCTCTATGACGCGGGCCCGGCCATGGGCGATTTCGATTTGGGCGAGCGGGTGGTGCTAC
CCAGCTTGCACAAGCTGGGGGTGCGCCAGCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGACCACGCCGGCGGCGCT
CGCGCCGTTCAGCGCGGTTTGCCGGTACTACGGGTGCTCAGTGGCGAAGCGTCGGCCTTGCCTGCTGTGCTACAAGCGCA
ATCTTGCGGTAGCGGCGAGCGTTGGCAGTGGGACGGGGTCAATTTTTCCCTCTGGCAATGGCATGACGCCGGTGATAGCA
ACCAGGATTCCTGTGTGTTGCTGGTCGAGGCGCAAGGCGAGAAGCTGCTGCTCACCGGTGATCTCGATGCCCGTGGCGAG
CGGGCCTGGGTGCGGGATTGGCAGGCGGGCCAGGTCGATTGGCTGCAGTCGCCTCATCACGGCAGTCGCAGTTCCTCCAG
TGAGGCGCTGTTGAACGCAACCGCCCCGCGTGGCGTGCTGATCTCCCGGGGGCGCTACAACGCCTTCGGTCATCCTCACC
CCGAGGTCATGGCGCGCTATCGGACGCACGGTATCCAGGCTTACGACAATGTCGAACACGGTGCCCTGCGCCTGCGTCTG
GGGGCGTTTGGCGAGCCTGAAGGGCTGCGCGCCCAGCGGCGTTTCTGGCGTGAGCCGAGATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.587

97.162

0.608
  comA Ralstonia pseudosolanacearum GMI1000

33.216

100

0.382