Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VP780_RS18995 Genome accession   NZ_CP142380
Coordinates   4114808..4115443 (-) Length   211 a.a.
NCBI ID   WP_327438468.1    Uniprot ID   -
Organism   Pseudomonas donghuensis strain ZF510     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4109808..4120443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP780_RS18965 (VP780_18965) murB 4110906..4111925 (-) 1020 WP_327438464.1 UDP-N-acetylmuramate dehydrogenase -
  VP780_RS18970 (VP780_18970) - 4111922..4112386 (-) 465 WP_327438465.1 low molecular weight protein-tyrosine-phosphatase -
  VP780_RS18975 (VP780_18975) kdsB 4112386..4113150 (-) 765 WP_327438466.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VP780_RS18980 (VP780_18980) - 4113147..4113332 (-) 186 WP_003247142.1 Trm112 family protein -
  VP780_RS18985 (VP780_18985) lpxK 4113370..4114380 (-) 1011 WP_327438467.1 tetraacyldisaccharide 4'-kinase -
  VP780_RS18990 (VP780_18990) - 4114380..4114811 (-) 432 WP_010223210.1 ExbD/TolR family protein -
  VP780_RS18995 (VP780_18995) exbB 4114808..4115443 (-) 636 WP_327438468.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VP780_RS19000 (VP780_19000) comA 4115514..4117736 (-) 2223 WP_327438469.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VP780_RS19005 (VP780_19005) - 4117880..4118422 (+) 543 WP_254286307.1 DUF2062 domain-containing protein -
  VP780_RS19010 (VP780_19010) - 4118390..4119169 (-) 780 WP_010223206.1 ABC transporter permease -
  VP780_RS19015 (VP780_19015) - 4119166..4120098 (-) 933 WP_010223205.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22872.09 Da        Isoelectric Point: 6.8759

>NTDB_id=925602 VP780_RS18995 WP_327438468.1 4114808..4115443(-) (exbB) [Pseudomonas donghuensis strain ZF510]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=925602 VP780_RS18995 WP_327438468.1 4114808..4115443(-) (exbB) [Pseudomonas donghuensis strain ZF510]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGGGTCACGCCACCGCATCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AACAGCTCACCAGTGACAAACTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAGATCCTCGCTGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCCGCCCGGGTCATTCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCTTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCCTTCATGGGCACCGGCATGACCACCAATGCGGCCGTGTTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAGGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853