Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VQ058_RS00055 Genome accession   NZ_CP142378
Coordinates   13125..13622 (+) Length   165 a.a.
NCBI ID   WP_054449476.1    Uniprot ID   A0A0R1FMI4
Organism   Apilactobacillus kunkeei strain GYUN-333     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8125..18622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ058_RS00040 - 10107..11396 (+) 1290 WP_263505073.1 MFS transporter -
  VQ058_RS00045 - 11518..12606 (+) 1089 WP_326865781.1 hypothetical protein -
  VQ058_RS00050 rpsF 12790..13080 (+) 291 WP_034530636.1 30S ribosomal protein S6 -
  VQ058_RS00055 ssb 13125..13622 (+) 498 WP_054449476.1 single-stranded DNA-binding protein Machinery gene
  VQ058_RS00060 rpsR 13651..13887 (+) 237 WP_034530639.1 30S ribosomal protein S18 -
  VQ058_RS00065 - 14050..16086 (+) 2037 WP_326865785.1 DHH family phosphoesterase -
  VQ058_RS00070 rplI 16154..16606 (+) 453 WP_041152670.1 50S ribosomal protein L9 -
  VQ058_RS00075 dnaB 16631..18019 (+) 1389 WP_034530644.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17900.29 Da        Isoelectric Point: 4.5407

>NTDB_id=925564 VQ058_RS00055 WP_054449476.1 13125..13622(+) (ssb) [Apilactobacillus kunkeei strain GYUN-333]
MINRTTLTGRLTRDVDLRYTPSGSAVGNFTLAVDRSFTNQQGEREADFINCVIWRKSAENFANFTHKGALVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSSNQGNNNAGNNAPQANAGNNNPFASSNNAAPSNGGNNSADPFANSGDQIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=925564 VQ058_RS00055 WP_054449476.1 13125..13622(+) (ssb) [Apilactobacillus kunkeei strain GYUN-333]
ATGATTAATCGTACAACTTTAACTGGTAGGTTAACACGGGATGTTGATTTGCGATACACTCCAAGCGGTTCAGCCGTAGG
TAACTTCACTTTAGCTGTTGATCGTAGTTTTACCAACCAACAAGGTGAAAGAGAAGCAGATTTTATCAACTGTGTTATCT
GGCGTAAATCCGCTGAAAACTTTGCTAACTTCACCCATAAGGGTGCTTTGGTTGGTATTGATGGACGTATTCAAACAAGA
AATTACGAAAATCAACAAGGCCAAAGAGTATATGTTACTGAAGTAGTTGTAGAAAACTTTGCATTACTAGAACCTCGTTC
AAGTAACCAAGGTAACAACAACGCCGGCAACAATGCTCCTCAAGCAAATGCAGGAAATAACAATCCTTTTGCTTCATCAA
ACAATGCTGCCCCATCTAATGGTGGTAACAACTCAGCGGATCCATTCGCTAACTCTGGTGATCAAATTGATATTTCCGAT
GATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1FMI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

66.471

100

0.685
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.618
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.242

0.364