Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8565_RS05340 Genome accession   NZ_AP028330
Coordinates   1020989..1021537 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10089     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1015989..1026537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8565_RS05305 (B10089_10400) - 1016251..1016676 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  R8565_RS05310 - 1016740..1017289 (+) 550 Protein_1024 nitroreductase family protein -
  R8565_RS05315 (B10089_10430) - 1017289..1017893 (+) 605 Protein_1025 NAD(P)H-dependent oxidoreductase -
  R8565_RS05320 (B10089_10440) pgsA 1018018..1018554 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8565_RS05325 (B10089_10450) rseP 1018551..1019657 (+) 1107 WP_002895962.1 RIP metalloprotease RseP -
  R8565_RS05330 (B10089_10460) - 1019650..1020516 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  R8565_RS05335 (B10089_10470) rpsF 1020603..1020980 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8565_RS05340 (B10089_10480) ssb 1020989..1021537 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  R8565_RS05345 (B10089_10490) rpsR 1021548..1021808 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8565_RS05350 (B10089_10500) lon 1021868..1024243 (-) 2376 WP_002853487.1 endopeptidase La -
  R8565_RS05355 (B10089_10510) - 1024260..1024907 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  R8565_RS05360 (B10089_10520) fliW 1025068..1025457 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8565_RS05365 (B10089_10530) proC 1025457..1026188 (+) 732 WP_002854026.1 pyrroline-5-carboxylate reductase Machinery gene
  R8565_RS05370 (B10089_10540) ctsT 1026185..1026487 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=92530 R8565_RS05340 WP_002854048.1 1020989..1021537(+) (ssb) [Campylobacter jejuni strain BCH-10089]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=92530 R8565_RS05340 WP_002854048.1 1020989..1021537(+) (ssb) [Campylobacter jejuni strain BCH-10089]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39

Multiple sequence alignment