Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J49_RS16315 Genome accession   NZ_CP163439
Coordinates   3701511..3702191 (-) Length   226 a.a.
NCBI ID   WP_274238924.1    Uniprot ID   -
Organism   Streptomyces sp. R28     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3696511..3707191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J49_RS16305 (AB5J49_16305) - 3698996..3699964 (+) 969 WP_369169359.1 hypothetical protein -
  AB5J49_RS16310 (AB5J49_16310) clpX 3700048..3701331 (-) 1284 WP_369169360.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J49_RS16315 (AB5J49_16315) clpP 3701511..3702191 (-) 681 WP_274238924.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J49_RS16320 (AB5J49_16320) clpP 3702242..3702847 (-) 606 WP_369175152.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J49_RS16325 (AB5J49_16325) tig 3703227..3704621 (-) 1395 WP_369169361.1 trigger factor -
  AB5J49_RS16340 (AB5J49_16340) - 3705213..3705422 (-) 210 WP_369169362.1 hypothetical protein -
  AB5J49_RS16345 (AB5J49_16345) - 3706863..3707033 (+) 171 WP_369169363.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25108.55 Da        Isoelectric Point: 4.5790

>NTDB_id=925252 AB5J49_RS16315 WP_274238924.1 3701511..3702191(-) (clpP) [Streptomyces sp. R28]
MNDFPGNGLYDRTRAEYAGPVAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=925252 AB5J49_RS16315 WP_274238924.1 3701511..3702191(-) (clpP) [Streptomyces sp. R28]
GTGAACGACTTCCCCGGCAACGGCCTGTACGACCGCACACGCGCCGAGTACGCGGGCCCCGTGGCCGAGTCCCGGTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCATTCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCGGGCGGCTCCTTCACCGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCATCCTGCTGGCCGCCGGCACGCCCG
GCAAGCGCATGGCGCTGCCCAACGCGCGGGTGCTGATCCACCAGCCGTACAGTGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGCGCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGTACGGGCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTTCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

44.776

88.938

0.398
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376