Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB5J49_RS15200 Genome accession   NZ_CP163439
Coordinates   3441735..3443663 (+) Length   642 a.a.
NCBI ID   WP_369169164.1    Uniprot ID   -
Organism   Streptomyces sp. R28     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3436735..3448663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J49_RS15165 (AB5J49_15165) - 3436879..3437157 (+) 279 WP_369169160.1 hypothetical protein -
  AB5J49_RS15185 (AB5J49_15185) - 3437872..3438180 (+) 309 WP_369169161.1 YtxH domain-containing protein -
  AB5J49_RS15190 (AB5J49_15190) - 3438383..3439840 (+) 1458 WP_369169162.1 FGGY-family carbohydrate kinase -
  AB5J49_RS15195 (AB5J49_15195) rcrP 3440002..3441735 (+) 1734 WP_369169163.1 ABC transporter ATP-binding protein Regulator
  AB5J49_RS15200 (AB5J49_15200) rcrQ 3441735..3443663 (+) 1929 WP_369169164.1 ABC transporter ATP-binding protein Regulator
  AB5J49_RS15205 (AB5J49_15205) - 3443852..3445172 (-) 1321 Protein_3020 RNA polymerase sigma factor -
  AB5J49_RS15210 (AB5J49_15210) dnaG 3445286..3447202 (-) 1917 WP_369169165.1 DNA primase -
  AB5J49_RS15215 (AB5J49_15215) - 3447356..3448621 (-) 1266 WP_369169166.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69689.22 Da        Isoelectric Point: 5.8810

>NTDB_id=925249 AB5J49_RS15200 WP_369169164.1 3441735..3443663(+) (rcrQ) [Streptomyces sp. R28]
MAGPMGRMMAGGGPDQHSLDFKVSGRRLLSHFKPERLTIYALLFCVVVSVGLSVAGPKILGAATDLVFAGIVGRQFEPGM
TKEQVLAAMRERGDGQIADMLRSTDFTPGEGIDFTAVGNVLLFALAVFVVAGLLMAVATRLVNRAVNRTMYRMREDVQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQEESAKQFAEQNEALYEAGFKAQFNSGIMQPLMLFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPMPGVRPEELRGRVALE
GVSFRYDPEKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSSGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRKVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHGELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=925249 AB5J49_RS15200 WP_369169164.1 3441735..3443663(+) (rcrQ) [Streptomyces sp. R28]
ATGGCCGGGCCTATGGGGCGGATGATGGCCGGTGGCGGCCCCGATCAGCACTCGCTGGACTTCAAGGTGTCGGGCAGGCG
GCTGCTCTCCCACTTCAAGCCCGAGCGGCTCACCATCTACGCGCTGCTGTTCTGCGTCGTCGTGAGCGTGGGTCTGTCGG
TCGCCGGGCCGAAGATCCTCGGTGCGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGCAGTTCGAGCCCGGGATG
ACCAAGGAGCAGGTCCTCGCGGCCATGCGGGAGCGCGGCGACGGCCAGATCGCCGACATGCTGCGCAGCACCGACTTCAC
GCCGGGCGAGGGCATCGACTTCACCGCTGTGGGGAACGTGCTCCTCTTCGCGCTCGCGGTGTTCGTCGTCGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCTGTGAACCGCACCATGTACCGGATGCGTGAGGACGTCCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATCGGGCAGACACTGCAGCAGTCGATGGGTCAGCTCATCAACTCGGTGCTCACCATCATCGGTGTGCTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCGTTGGTGACCGTGCCGCTGTCGTTCGTGGTCGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGGTCGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCCAAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGCTGTTCGTGTCGAACATCAACTACGTGCTGGTGGCG
GTGGTCGGCGGTCTGCGGGTCGCGTCGGGCTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCGGGTGTCGCGTCCGCCGAGCGGATCTTCGAGC
TGCTGGACGCGGAGGAGCAGGAGGCCGACCCCATGCCGGGGGTGCGGCCGGAGGAGCTGCGGGGGCGGGTGGCGCTGGAG
GGGGTGTCCTTCCGGTACGACCCCGAGAAGCCGCTGATCGAGGACCTGTCGCTGGCGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGGCCCACGGGTGCCGGCAAGACGACTCTCGTGAATCTGCTGATGCGGTTCTACGACGTCTCGTCCGGGCGGA
TCACCCTCGACGGGGTCGACATCGCGCGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGGATGGTGCTGCAAGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGGAAGGTGACCCGGGGCGAGATCGAGGAAGC
CGCGAGGGCCGCCCACGCCGACCGGTTCATCCGTACCCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGGTCGG
GGGTCAGTGCGGGTGAGAAGCAGCTGATCACCATCGCTCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTGGACGAG
GCGACCTCGTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCAAACTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGGGCGATCGTGGAACAGG
GCGCGCACGGCGAGCTGTTGGCGGCCGACGGGGCGTATGCGCGGTTGTACAAGGCGCAGTTCGCCCAGGCGGTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.452

96.573

0.4