Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J49_RS15195 Genome accession   NZ_CP163439
Coordinates   3440002..3441735 (+) Length   577 a.a.
NCBI ID   WP_369169163.1    Uniprot ID   -
Organism   Streptomyces sp. R28     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3435002..3446735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J49_RS15155 (AB5J49_15155) - 3435703..3436104 (-) 402 WP_369169159.1 hypothetical protein -
  AB5J49_RS15160 (AB5J49_15160) - 3436204..3436725 (-) 522 Protein_3014 IS5 family transposase -
  AB5J49_RS15165 (AB5J49_15165) - 3436879..3437157 (+) 279 WP_369169160.1 hypothetical protein -
  AB5J49_RS15185 (AB5J49_15185) - 3437872..3438180 (+) 309 WP_369169161.1 YtxH domain-containing protein -
  AB5J49_RS15190 (AB5J49_15190) - 3438383..3439840 (+) 1458 WP_369169162.1 FGGY-family carbohydrate kinase -
  AB5J49_RS15195 (AB5J49_15195) rcrP 3440002..3441735 (+) 1734 WP_369169163.1 ABC transporter ATP-binding protein Regulator
  AB5J49_RS15200 (AB5J49_15200) rcrQ 3441735..3443663 (+) 1929 WP_369169164.1 ABC transporter ATP-binding protein Regulator
  AB5J49_RS15205 (AB5J49_15205) - 3443852..3445172 (-) 1321 Protein_3020 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62958.19 Da        Isoelectric Point: 6.6176

>NTDB_id=925248 AB5J49_RS15195 WP_369169163.1 3440002..3441735(+) (rcrP) [Streptomyces sp. R28]
MLIRLLRTYLRPYRKPIAWLVLLQFLQTCATLYLPTLNADIIDTGVVNGDTGYILSYGALMIGISLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGISVTLIVRQLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKSNAELTEMAMGTGRLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PRTPVRELRRHGHLEIRGAGFRYPGAEEPVLKAIDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGRVLVDGEDVA
SVDPQLLAKTVSLVPQRPYLFAGTVATNLRYGNPDATDEELWHALKVAQAKEFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETSEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=925248 AB5J49_RS15195 WP_369169163.1 3440002..3441735(+) (rcrP) [Streptomyces sp. R28]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACCGAAAACCCATCGCCTGGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGCTGAACGCGGACATCATCGACACGGGCGTCGTCAACGGCGACACCGGCTACA
TCCTGTCCTACGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCG
CGGACCGCGGCGGCGCTCGGGCGGGACGTGCGCGCGGCCGTGTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCACTCGGCCTGGATGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTGGTGCCCGTGCTCGGCATCAGTGTGACCTTGATCGTGCGGCAGCTGCGGCCGCTGTTCCGGACCATGCA
GGTACGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGTGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGCTTCAGGAAGTCCAACGCCGAGCTCACCGAGATGGCGATGGGCACCGGCAGACTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGGGCACATCGCATCGACAGCGG
CGGGATGCAGATCGGTGACCTGACCGCGTTCCTCGCCTATCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTCCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACGTCGTCGAGCGTGGTTCCG
CCCCGCACGCCGGTGCGGGAGCTGCGCCGGCACGGTCATCTGGAGATCCGGGGCGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGGCGATCGACCTGGTCGCGCTGCCGGGTGAGACGACGGCCGTGATCGGGTCGACCGGCAGCGGGA
AGTCGACCCTGCTGGGGCTCGTCCCGCGCCTGTTCGACGCGACCGACGGGCGGGTGCTGGTGGACGGGGAGGACGTGGCG
AGCGTCGATCCCCAGCTGCTGGCGAAGACCGTGAGCCTCGTACCGCAGCGGCCGTATCTGTTCGCCGGGACGGTGGCGAC
CAACCTCCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGAAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGGCTGGAGGGCGGGCTCGACGCGCCCATCGCGCAGGGCGGCACGAACGTGTCGGGCGGTCAGCGCCAGCGCCTC
GCCATCGCGCGCACGCTCGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACGGA
CGCCGCGCTGCGTGCGGCGCTCGCCCGCGAGACCTCCGAGGCGACCGTCGTCATCGTCGCCCAGCGCGTGGCCACCATCC
GGGACGCGGACCGGATCGTCGTGCTCGACGAGGGGCGGGTCGTCGGCACGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(21-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.555

100

0.4