Detailed information NTG0925251

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AB5J49_RS16310
• Genome accession: NZ_CP163439
• Coordinates: 3700048..3701331 (-)
• Length: 427 a.a.
• NCBI ID: WP_369169360.1
• Uniprot ID: -
• Organism: Streptomyces sp. R28
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3695048..3706331

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J49_RS16300 (AB5J49_16300)	-	3696208..3698859 (-)	2652	WP_369169358.1	valine--tRNA ligase	-
AB5J49_RS16305 (AB5J49_16305)	-	3698996..3699964 (+)	969	WP_369169359.1	hypothetical protein	-
AB5J49_RS16310 (AB5J49_16310)	clpX	3700048..3701331 (-)	1284	WP_369169360.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J49_RS16315 (AB5J49_16315)	clpP	3701511..3702191 (-)	681	WP_274238924.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J49_RS16320 (AB5J49_16320)	clpP	3702242..3702847 (-)	606	WP_369175152.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J49_RS16325 (AB5J49_16325)	tig	3703227..3704621 (-)	1395	WP_369169361.1	trigger factor	-
AB5J49_RS16340 (AB5J49_16340)	-	3705213..3705422 (-)	210	WP_369169362.1	hypothetical protein	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46795.62 Da
• Isoelectric Point: 4.7866

>NTDB_id=925251 AB5J49_RS16310 WP_369169360.1 3700048..3701331(-) (clpX) [Streptomyces sp. R28]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELEAKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPREARRGPGEQKSA

Nucleotide

• Length: 1284 bp

>NTDB_id=925251 AB5J49_RS16310 WP_369169360.1 3700048..3701331(-) (clpX) [Streptomyces sp. R28]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCTGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACCA
GTGAGGTCCGCTGGGAGGAACTGCCCAAGCCGCGCGAGATCTACGAGTTCCTCGAGGGGTACGTGGTCGGCCAGGAGGCG
GCGAAGAAGGCCCTCTCCGTCGCCGTCTACAACCACTACAAGCGCGTTCAGGCCGGCGAGAACGGCGGCGGCCAAAGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACGCTGCTCGCGCAGA
CCCTGGCGCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGGAAGAGTGAGAATCCGTCGATCACGCGGGACGTCAGCGGTGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACGACGGCCTCGGTCCCGCCCCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCCTTCGCGGGCCTGGAAAAGCTCATCGAGTCCCGGGCGGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGCGAGCTGGAGGCCAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGCCTCCCCGTCATCACCTCGGTCCACAACCTCGACCGC
GAGGCCCTGCTCCAGATCCTCGTCGAGCCGCGTAACGCGCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTCGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCAATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTGATGTCGGTGATGTACGAGGTGCCGTCCCGCAAGGACGTCGCCCGGGTCGTCATCACG
GCGGACGTCGTTCACTCGAACGTGAACCCGACGCTGATTCCGCGAGAGGCGCGCCGCGGACCGGGCGAGCAGAAGTCGGC
GTAG

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.438	94.145	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.126	96.487	0.522