NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	AB5J56_RS13720	Genome accession	NZ_CP163435
Coordinates	3089431..3091056 (-)	Length	541 a.a.
NCBI ID	WP_369232992.1	Uniprot ID	-
Organism	Streptomyces sp. R21
Function	promote branch migration; interact with DprA; integration of tDNA (predicted from homology) Homologous recombination

Genomic Context

Location: 3084431..3096056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J56_RS13695 (AB5J56_13690)	rpsB	3084613..3085533 (-)	921	WP_369232988.1	30S ribosomal protein S2	-
AB5J56_RS13700 (AB5J56_13695)	-	3085816..3086400 (+)	585	WP_369232989.1	murein hydrolase activator EnvC	-
AB5J56_RS13705 (AB5J56_13700)	-	3086473..3087030 (-)	558	WP_369242536.1	TetR/AcrR family transcriptional regulator	-
AB5J56_RS13710 (AB5J56_13705)	whiG	3087175..3088017 (-)	843	WP_369232990.1	RNA polymerase sigma factor WhiG	-
AB5J56_RS13715 (AB5J56_13710)	dprA	3088289..3089434 (-)	1146	WP_369232991.1	DNA-processing protein DprA	-
AB5J56_RS13720 (AB5J56_13715)	comM	3089431..3091056 (-)	1626	WP_369232992.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
AB5J56_RS13725 (AB5J56_13720)	-	3091056..3091436 (-)	381	WP_369232993.1	YraN family protein	-
AB5J56_RS13730 (AB5J56_13725)	-	3091578..3091886 (-)	309	WP_005311352.1	DUF2469 domain-containing protein	-
AB5J56_RS13735 (AB5J56_13730)	-	3091942..3092472 (-)	531	WP_369232994.1	NUDIX hydrolase	-
AB5J56_RS13740 (AB5J56_13735)	lepB	3092462..3093205 (-)	744	WP_369232995.1	signal peptidase I	-
AB5J56_RS13745 (AB5J56_13740)	lepB	3093316..3094230 (-)	915	WP_369232996.1	signal peptidase I	-
AB5J56_RS13750 (AB5J56_13745)	lepB	3094115..3095200 (-)	1086	WP_369232997.1	signal peptidase I	-
AB5J56_RS13755 (AB5J56_13750)	lepB	3095193..3095909 (-)	717	WP_369232998.1	signal peptidase I	-

Sequence

Protein

Download Length: 541 a.a. Molecular weight: 56559.00 Da Isoelectric Point: 6.2939

                                >NTDB_id=925157 AB5J56_RS13720 WP_369232992.1 3089431..3091056(-) (comM) [Streptomyces sp. R21]

MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKGGSG

FDLAVACAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGVLPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS

LRQLIAVLTDEPVPEEPPDELGRPDPLLAGLRVPGTGEATGLCGMAVAEHDRGHDLADVVGQLSARTAMEVAAAGGHHVF

LQGPPGAGKTMLAERMPSILPRLTRTESLEVTAVHSVAGLLPAGKPMVDDPPYCAPHHSATMQALVGGGKGLARPGAVSL

AHRGVLFLDEAPEFSSFALDALRQPLEAGHVVIARSAGVVRFPAKFLMVLAANPCPCGRFSVANDLCECPPSSVRRYQAR

LSGPLLDRMDLRVDVEPVTRAELTERGAQGESTQMVADRVRAARERAAARLAGTPWHTNSEVPGRELRSRWQALPGAMDE

AERSLERGALTARGLDRVLRVAWSVADLSGHDRPDAGDVTLALQLRTGVPRGVPMLIGSRP

Nucleotide

Download Length: 1626 bp

                                >NTDB_id=925157 AB5J56_RS13720 WP_369232992.1 3089431..3091056(-) (comM) [Streptomyces sp. R21]

ATGGGATTCGCGCGTACGTGTTCCGTGGCGCTCGTCGGCGTCGAGGGCGTCGTGGTCGAGGTCCAGGCCGACCTGGAGCC

CGGAGTCGCCGCGTTCACGCTGGTGGGGCTCCCTGACAAGAGCCTGACGGAGAGCCGCGACCGGGTGCGGGCCGCGGTGG

TGAACTCCGGCGCCGAGTGGCCGCAGAAGAAACTCACGGTCGGGCTGAGCCCGGCGTCCGTGCCCAAGGGCGGCTCCGGC

TTCGACCTCGCCGTGGCGTGCGCCGTACTCGGAGCCGCCGAGCGCATCGATCCCCGTGTCCTCGCCGACATCGTGATGAT

CGGCGAGCTGGGGCTCGACGGGAGGGTACGACCGGTGCGGGGCGTGCTGCCGGCCGTGCTGGCCGCGGCCGACGCGGGCT

ACGAACAGGTGGTGGTCCCGGAGTGCGCGGCGGCCGAGGCCTCGCTGGTGCCCGGGGTCTCGGTGCTCGGCGTCCGCAGC

CTGCGTCAGCTGATCGCGGTACTGACGGACGAGCCGGTGCCCGAGGAGCCGCCGGACGAGCTCGGCCGGCCCGACCCGCT

CCTCGCCGGGCTGCGCGTGCCCGGCACGGGCGAGGCGACCGGCCTGTGCGGCATGGCCGTGGCCGAGCACGACCGGGGGC

ACGACCTCGCCGACGTGGTCGGCCAGCTGTCCGCGCGCACCGCGATGGAGGTCGCTGCCGCCGGCGGACACCACGTCTTT

CTGCAGGGCCCACCGGGAGCGGGCAAGACGATGCTGGCCGAGCGCATGCCGTCGATCCTGCCCCGTCTCACCCGGACCGA

GTCCCTGGAGGTGACGGCGGTCCACTCGGTCGCGGGCCTGCTGCCGGCGGGCAAACCGATGGTGGACGACCCGCCCTACT

GCGCGCCTCACCACTCGGCGACGATGCAGGCACTCGTCGGAGGCGGCAAGGGGCTCGCCCGGCCCGGCGCCGTGTCGCTG

GCCCATCGTGGGGTGCTCTTCCTGGATGAGGCACCGGAGTTCAGCAGCTTCGCGCTGGACGCCCTGCGGCAGCCGCTTGA

GGCCGGGCACGTCGTCATCGCACGCAGCGCCGGTGTCGTGCGGTTTCCGGCGAAGTTCCTGATGGTGCTCGCGGCCAACC

CCTGCCCCTGCGGGCGCTTCAGCGTGGCCAACGACCTCTGCGAGTGCCCGCCCTCCAGCGTACGGCGCTACCAGGCCAGG

CTCTCCGGGCCGCTGCTCGACCGGATGGACCTGCGGGTCGACGTTGAGCCGGTCACCCGGGCCGAGCTGACGGAGCGCGG

CGCTCAGGGGGAGTCGACGCAGATGGTGGCGGACCGGGTGCGGGCGGCGCGGGAGCGGGCGGCCGCACGCCTTGCCGGGA

CCCCGTGGCACACCAACAGCGAGGTGCCCGGGCGGGAGCTGCGTAGCCGCTGGCAGGCCCTGCCGGGCGCGATGGACGAG

GCGGAACGGAGCCTGGAGCGCGGTGCGCTGACGGCACGCGGCCTGGACCGGGTGCTCCGCGTCGCCTGGAGCGTCGCCGA

CCTGAGCGGGCACGACCGCCCCGACGCCGGGGACGTCACCCTCGCCCTGCAACTGCGCACCGGCGTGCCCCGCGGAGTGC

CGATGCTGATCGGCTCGCGCCCATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae O1 biovar El Tor strain E7946	39.412	94.27	0.372
comM	Vibrio cholerae strain A1552	39.412	94.27	0.372
comM	Acinetobacter baylyi ADP1	38.14	97.412	0.372
comM	Legionella pneumophila str. Paris	37.336	98.521	0.368
comM	Legionella pneumophila strain ERS1305867	37.336	98.521	0.368
comM	Vibrio campbellii strain DS40M4	38.627	94.27	0.364

Detailed information NTG0925157