Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU50_RS13005 Genome accession   NZ_AP025514
Coordinates   2851512..2852144 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio toranzoniae strain CECT 7225     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2846512..2857144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS12985 - 2848254..2848724 (+) 471 WP_060468727.1 TIGR02444 family protein -
  OCU50_RS12990 - 2848998..2849990 (+) 993 WP_060468728.1 hydrolase -
  OCU50_RS12995 - 2850112..2850324 (+) 213 WP_017055816.1 YheU family protein -
  OCU50_RS13000 - 2850402..2851271 (+) 870 WP_017055817.1 phosphoribulokinase -
  OCU50_RS13005 crp 2851512..2852144 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU50_RS13010 - 2852329..2853120 (-) 792 WP_060468729.1 DUF1338 domain-containing protein -
  OCU50_RS13015 astD 2853333..2854790 (-) 1458 WP_060468730.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU50_RS13020 astA 2854831..2855850 (-) 1020 WP_060468731.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=92418 OCU50_RS13005 WP_004410522.1 2851512..2852144(+) (crp) [Vibrio toranzoniae strain CECT 7225]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=92418 OCU50_RS13005 WP_004410522.1 2851512..2852144(+) (crp) [Vibrio toranzoniae strain CECT 7225]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATTGTGAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTATTCGAAGAAGAC
CAAGAGCGTACTGCGTGGGTTCGAGCAAAATCTCCTTGTGAAGTCGCTGAGATTTCTTTCAAGAAATTCCGCCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGTCTTTCAGCGCAAATGGCAAGCCGCCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACCGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAACCCGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAAATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTAAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment