Detailed information NTG0924042

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB0R08_RS07850
• Genome accession: NZ_CP162609
• Coordinates: 1736696..1737787 (+)
• Length: 363 a.a.
• NCBI ID: WP_069736618.1
• Uniprot ID: A0ABQ2SL34
• Organism: Streptomyces sp. 1268
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1731696..1742787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R08_RS07835	-	1731700..1733058 (+)	1359	WP_408991528.1	deoxyguanosinetriphosphate triphosphohydrolase	-
AB0R08_RS07840	-	1733204..1734463 (+)	1260	WP_408991529.1	NAD(P)/FAD-dependent oxidoreductase	-
AB0R08_RS07845	dnaG	1734557..1736488 (+)	1932	WP_109198458.1	DNA primase	-
AB0R08_RS07850	rpoS	1736696..1737787 (+)	1092	WP_069736618.1	RNA polymerase sigma factor	Regulator
AB0R08_RS07855	rcrQ	1737803..1739731 (-)	1929	WP_408991530.1	ABC transporter ATP-binding protein	Regulator
AB0R08_RS07860	rcrP	1739731..1741464 (-)	1734	WP_107411335.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 363 a.a.
• Molecular weight: 40602.35 Da
• Isoelectric Point: 6.4131

>NTDB_id=924042 AB0R08_RS07850 WP_069736618.1 1736696..1737787(+) (rpoS) [Streptomyces sp. 1268]
MQTRTVTTTTAPMAAIPAQNRALRHPETAAGPPGHAPEAVMVEATHLPEPPDPRNRADSGGPTSDLFRQYLREIGRIPLL
TAAEEVELARRVEAGLFAEERLAGTPDLDSRLAVDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLDDGR
PRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYLD

Nucleotide

• Length: 1092 bp

>NTDB_id=924042 AB0R08_RS07850 WP_069736618.1 1736696..1737787(+) (rpoS) [Streptomyces sp. 1268]
GTGCAGACCCGGACCGTGACGACCACGACCGCGCCCATGGCGGCCATCCCCGCGCAGAACAGGGCCCTGCGCCACCCGGA
GACCGCAGCCGGCCCGCCCGGACACGCACCCGAGGCAGTCATGGTGGAAGCGACGCACCTCCCCGAACCGCCGGACCCCA
GGAACCGGGCGGACTCCGGCGGCCCCACCTCCGACCTGTTCCGGCAGTATCTGCGCGAGATCGGCCGCATCCCCCTGCTC
ACCGCGGCCGAGGAGGTCGAGCTCGCCCGCCGCGTCGAAGCCGGACTCTTCGCCGAGGAACGCCTCGCCGGCACCCCGGA
CCTCGACTCCCGCCTCGCCGTCGACCTCGACCGGCTGGTGGTGATGGGCCGCACCGCCAAACGCCGCCTCATCGAGGCCA
ACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGGTACGTGGGCCGCGGGCTGACCATGCTCGACCTCGTCCAGGAGGGCAAC
CTCGGCCTGATCCGGGCCGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCG
CCAGGCCATGTCCCGCGCCCTCGCGGACCAGGCCCGCACCATCCGCGTCCCCGTCCACGTCGTGGAGCTGATCAACCGCG
TGGTGCGCGTCCAGCGCCGCCTCCTCCAGGAGCGCGGCGTCGAGCCGACCGCCGAGGACATCGCCGTCGAGCTGGACCTG
ACGCCCGAGCGGGTCACCGAAGTCCTCCGCCTCGCCCAGGAACCGGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGA
CGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCGCATCGCCCGTCGAGTCCGCCGCCTTCCTGCTGCTGCGCCAGC
ACCTGGAGGCGGTCCTCTCCACCCTCGGCGAGCGCGAACGCAAGGTCGTCCAGCTGCGGTACGGCCTGGACGACGGGCGG
CCCCGCACCCTGGAGGAGATAGGACGGATCTTCGGCGTGACGCGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCAG
CAGGCTGCGGGACCACGCCTTCGCCGACCAACTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (65-98)

• Sigma-70, region 4 (Sigma70_r4) (298-350)

• Sigma-70 region 3 (Sigma70_r3) (209-285)

• Sigma-70 region 2 (Sigma70_r2) (130-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	41.21	95.592	0.394