Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB0R08_RS07855 Genome accession   NZ_CP162609
Coordinates   1737803..1739731 (-) Length   642 a.a.
NCBI ID   WP_408991530.1    Uniprot ID   -
Organism   Streptomyces sp. 1268     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1732803..1744731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R08_RS07840 - 1733204..1734463 (+) 1260 WP_408991529.1 NAD(P)/FAD-dependent oxidoreductase -
  AB0R08_RS07845 dnaG 1734557..1736488 (+) 1932 WP_109198458.1 DNA primase -
  AB0R08_RS07850 rpoS 1736696..1737787 (+) 1092 WP_069736618.1 RNA polymerase sigma factor Regulator
  AB0R08_RS07855 rcrQ 1737803..1739731 (-) 1929 WP_408991530.1 ABC transporter ATP-binding protein Regulator
  AB0R08_RS07860 rcrP 1739731..1741464 (-) 1734 WP_107411335.1 ABC transporter ATP-binding protein Regulator
  AB0R08_RS07865 - 1741699..1743150 (-) 1452 WP_408991532.1 FGGY family carbohydrate kinase -
  AB0R08_RS07870 - 1743219..1743524 (-) 306 WP_030577619.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69230.57 Da        Isoelectric Point: 4.9440

>NTDB_id=924043 AB0R08_RS07855 WP_408991530.1 1737803..1739731(-) (rcrQ) [Streptomyces sp. 1268]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFGREKASLWLMLGAVAVSVALSVAGPKILGKATDLVFAGVVGREMAGGT
TKAQAIEGLREDGRGSMADMLSGVDFTPGEGIDFGAVGNVLLLALVVYVGAGLLMLVATRVSIRVINRIVFQLREDLQTK
LARLPLSYFDRAKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLIVMFWISPLLALVALVTVPLSVVVATQVGK
RSQPQFVRQWQVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFASGIMQPLMFFISNINYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLIQSGIASAERVFELLDAEEQEPDPERGERPEQPVGRVSLE
KVSFRYEPEKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDDLRSSIGMVLQDT
WLFGGTIAENIAYGASREVTREEIEEASRAAHADRFIRTLPDGYDSVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLAAGGAYARLYAAQFAEALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=924043 AB0R08_RS07855 WP_408991530.1 1737803..1739731(-) (rcrQ) [Streptomyces sp. 1268]
ATGGCCGGTCCGGGCGGACGGATGATGGCCGGGGGCGCGCCCACCGACCGGTCGATGGATTTCAAGGGGTCGAGCAAGCG
GCTGCTGAAGCGGTTCGGCCGGGAGAAGGCCTCGCTGTGGCTGATGCTGGGCGCGGTGGCGGTGAGCGTCGCGCTGTCGG
TGGCCGGGCCGAAGATCCTGGGGAAGGCGACCGACCTGGTCTTCGCCGGGGTGGTCGGGCGGGAGATGGCCGGGGGCACG
ACGAAGGCGCAGGCGATCGAGGGGCTGCGGGAGGACGGCCGGGGGTCGATGGCCGACATGCTGTCGGGTGTGGACTTCAC
CCCGGGTGAGGGCATCGACTTCGGCGCGGTGGGGAACGTCCTGCTGCTGGCCCTGGTGGTCTACGTCGGGGCCGGGCTGC
TGATGCTGGTGGCGACGCGGGTGTCGATCCGGGTGATCAACCGGATCGTGTTCCAGCTGCGTGAGGACCTCCAGACGAAG
CTGGCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGTGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCTCGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACGATCGTCGGCGTGCTGATCGTGATGT
TCTGGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTCCCGCTGTCGGTGGTCGTGGCGACGCAGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCGGCAGTGGCAGGTGACGGGGAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAACAGAACGACGCCCTGTACGAGGCGG
GCTTCAAGGCCCAGTTCGCCAGCGGGATCATGCAGCCGCTGATGTTCTTCATCTCGAACATCAACTATGTGCTGGTCGCG
GTGGTCGGCGGGCTGCGGGTCGCCTCGGGCGCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCCAACCTCATCCAGTCCGGTATCGCGTCGGCGGAGCGGGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGGAGCCGGACCCGGAGCGCGGGGAGCGCCCGGAGCAACCGGTCGGCCGGGTCTCGCTGGAG
AAGGTGTCCTTCCGGTACGAGCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGAGCGTGGAGCCGGGGCAGACCGTCGC
GATCGTCGGTCCGACGGGGGCGGGCAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGGCGGGCGGA
TCGCGCTCGACGGGGTCGATGTGGCGAAGATGTCCCGGGACGATCTGCGGTCGTCCATAGGGATGGTGCTTCAGGACACC
TGGCTGTTCGGCGGGACGATCGCGGAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGC
GTCCCGGGCGGCGCATGCGGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACTCGGTGATCGACGACGAGGGCACCG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACCAGCTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCCCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAGCGGGTCGATCGTCGAACAGG
GCACGCACGAGGAGCTGTTGGCGGCCGGTGGGGCCTATGCCCGGTTGTACGCCGCCCAGTTCGCGGAGGCGCTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.939

82.243

0.361