Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   AB0R08_RS07860 Genome accession   NZ_CP162609
Coordinates   1739731..1741464 (-) Length   577 a.a.
NCBI ID   WP_107411335.1    Uniprot ID   -
Organism   Streptomyces sp. 1268     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1734731..1746464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R08_RS07850 rpoS 1736696..1737787 (+) 1092 WP_069736618.1 RNA polymerase sigma factor Regulator
  AB0R08_RS07855 rcrQ 1737803..1739731 (-) 1929 WP_408991530.1 ABC transporter ATP-binding protein Regulator
  AB0R08_RS07860 rcrP 1739731..1741464 (-) 1734 WP_107411335.1 ABC transporter ATP-binding protein Regulator
  AB0R08_RS07865 - 1741699..1743150 (-) 1452 WP_408991532.1 FGGY family carbohydrate kinase -
  AB0R08_RS07870 - 1743219..1743524 (-) 306 WP_030577619.1 YtxH domain-containing protein -
  AB0R08_RS07890 - 1744541..1746334 (+) 1794 WP_408991533.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62199.29 Da        Isoelectric Point: 5.1422

>NTDB_id=924044 AB0R08_RS07860 WP_107411335.1 1739731..1741464(-) (rcrP) [Streptomyces sp. 1268]
MLIKLLRAHLGPYKKPIVLLVLLQLLQTCATLYLPSLNADIIDNGVVTGDTGYILEFGGLMIAVSVLQVLCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLLAFTLMVSAPIMCVGGIIMALGLDVPLSAV
LLAVVPVLGVSVGLIVRKMGPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTESSVVP
PVAPVLELGRHGHLEVRGAEFRYPGAEEPVLRNVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALDVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRLVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=924044 AB0R08_RS07860 WP_107411335.1 1739731..1741464(-) (rcrP) [Streptomyces sp. 1268]
GTGCTCATAAAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTTCTCCTCCAGCTGCTCCA
GACCTGCGCCACCCTGTATCTGCCCAGCCTGAACGCCGACATCATTGACAACGGTGTCGTCACCGGCGACACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTTCTCCAGGTTCTGTGCAATGTGGGGGCCGTGTACTACGGGGCC
CGTACCGCCTCCGCCCTCGGGCGTGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGGGAGCTGGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGCTGGCGTTCA
CGCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGGATCATCATGGCGCTCGGCCTGGATGTGCCGCTCTCCGCCGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGTGTCTCGGTCGGGCTCATCGTGCGGAAGATGGGGCCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTCCGGGACG
GGTACGAGGAGAAGCGCTTCCGGGGTGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTCATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACCGAGTCGAGTGTCGTGCCG
CCCGTCGCGCCGGTCCTGGAGTTGGGCCGGCACGGGCATCTGGAGGTGCGGGGGGCCGAGTTCCGGTATCCGGGGGCGGA
GGAGCCGGTGCTGCGGAACGTCGACCTGGTGGCCCGGCCCGGGGAGACCACCGCGGTCATCGGGTCCACCGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGCGCTGCTGGCGAAGACGGTGTCGCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGTTGGACGTGGCGCAGGCCAAGGAGTTCG
TGGAGGCGCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGTCAGCGGCAGCGGCTG
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGCTCGTGGGTACCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.28

100

0.397