Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV44_RS01285 Genome accession   NZ_AP025510
Coordinates   287546..289264 (+) Length   572 a.a.
NCBI ID   WP_139685159.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 282546..294264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS01265 pilM 284760..285785 (+) 1026 WP_139685156.1 type IV pilus assembly protein PilM Machinery gene
  OCV44_RS01270 pilN 285769..286383 (+) 615 WP_139685157.1 PilN domain-containing protein Machinery gene
  OCV44_RS01275 pilO 286376..287005 (+) 630 WP_139685158.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV44_RS01280 pilP 286989..287510 (+) 522 WP_390903455.1 pilus assembly protein PilP Machinery gene
  OCV44_RS01285 pilQ 287546..289264 (+) 1719 WP_139685159.1 type IV pilus secretin PilQ Machinery gene
  OCV44_RS01290 aroK 289441..289959 (+) 519 WP_009848907.1 shikimate kinase AroK -
  OCV44_RS01295 aroB 289984..291072 (+) 1089 WP_012604944.1 3-dehydroquinate synthase -
  OCV44_RS01300 - 291152..292669 (+) 1518 WP_139685160.1 SPOR domain-containing protein -
  OCV44_RS01305 - 292739..293599 (+) 861 WP_139685161.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 62080.81 Da        Isoelectric Point: 4.4008

>NTDB_id=92349 OCV44_RS01285 WP_139685159.1 287546..289264(+) (pilQ) [Vibrio tasmaniensis strain LMG 20012]
MIKGLSKLINKGLQSLVVSVMLGVSVFSYAESLPNQLDNIDFRVNKGKDAVIIIELATSTAVVDVQRAQEGLSIELLNTQ
VDDDKLYLLDVKDFATLVEGIEVYKETPSTRLLATIAGDYQYEYNLKGRFIEVVISKPTIDEVTIEKNVLEKEGKVISIN
FQDIPVRNVLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEK
SRLEEELGELKSEIIKINFAKATDIADMIGGEGAVSMLSERGSITIDERTNSLLIRELEENTAVIRGIIESLDIPVKQVQ
IEARIVTVSEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFLNVNLGATSPSASSIAFQVAKL
GSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD
LSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGKSE
LLIFVTPKVVIQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=92349 OCV44_RS01285 WP_139685159.1 287546..289264(+) (pilQ) [Vibrio tasmaniensis strain LMG 20012]
ATGATTAAAGGACTAAGTAAGTTAATAAATAAAGGGCTGCAAAGCCTAGTTGTGTCTGTGATGTTGGGGGTTAGCGTATT
CAGCTATGCTGAGAGCTTGCCTAATCAATTGGATAATATTGATTTTAGGGTCAACAAGGGGAAAGACGCCGTCATCATTA
TCGAATTGGCAACCAGCACTGCTGTGGTGGATGTTCAACGTGCTCAGGAAGGTTTAAGTATCGAGTTACTCAATACTCAG
GTCGATGACGATAAGCTTTACCTACTGGATGTGAAGGACTTCGCGACCTTAGTCGAAGGTATTGAGGTGTACAAGGAAAC
GCCCAGTACTCGATTGTTGGCAACGATCGCTGGTGACTATCAATATGAATACAACTTAAAAGGTCGCTTTATTGAGGTAG
TGATAAGTAAGCCTACTATCGATGAAGTGACAATAGAGAAAAATGTTTTAGAAAAAGAAGGCAAGGTGATATCGATTAAC
TTCCAAGATATCCCTGTACGAAATGTTCTGCAGCTTATTGCTGATTACAACGATTTCAATCTCGTTGTCTCTGATTCAGT
CGCGGGTAATCTGACTTTACGTTTAGATGGTGTGCCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAGGGGCTAG
ATAAGCGTGTTGATGGCAACGTTATCTTGGTGGCACCTAAAGCTGAGCTCGACCTTAGAGAGCAACAAGCGCTAGAGAAA
TCTCGTTTGGAAGAAGAGCTGGGTGAGCTTAAGTCGGAAATCATCAAGATTAACTTTGCCAAAGCCACTGATATTGCCGA
CATGATTGGTGGTGAAGGTGCGGTAAGTATGTTGTCCGAGCGAGGCTCTATCACTATTGATGAGCGAACTAACTCTCTAT
TGATCCGTGAGTTGGAAGAAAATACAGCAGTGATACGAGGCATCATTGAGTCCTTGGATATCCCTGTAAAGCAAGTACAG
ATAGAAGCACGGATAGTGACCGTCAGTGAGGGTAACCTTGATGAACTAGGAGTGCGTTGGGGCGTTTCCTCAACCAACGG
AAGCTTCAAAGTTGGCGGCTCGATAGAGGGCAACCATCCATCGCAAATTACGCCGTATGACGATAATGGTGGGAATAGTG
CGATTGACGATTTCCTCAACGTTAATCTAGGAGCGACTTCCCCGAGCGCGTCGAGTATTGCGTTTCAGGTGGCCAAGCTG
GGTTCTGATACCTTGCTCGATCTTGAATTGTCAGCACTGCAACAAGAGTCGAAAGCAGAGATTATTTCTAGTCCACGCTT
AATCACCACCAATAAAAAACCCGCTTATATTGAGCAAGGTACTGAAATCCCTTATTTAGAGTCCTCTTCAAGTGGTGCTA
CTTCGGTCGCATTTAAGAAAGCGGTACTGAGTCTCAAGGTGACTCCGCAGATCACCCCCGACAATCGCTTGGTATTGGAT
TTGAGTGTTACTCAAGATAGGCCGGGGCAAGTTGTGAAAACAGGCACAGGTGAAGCTGTCGCTATTGATACGCAAAGGAT
TGGTACGCAAGTGCTTGTTAATAATGGCGAAACGGTTGTGTTAGGTGGTATTTTTCAACACAGTGTGAGCAGTCAAGTTG
ATAAAGTTCCACTGTTAGGAGACCTTCCTGTTCTTGGCGCATTGTTCCGTCGTAGCTATGAAAATGTAGGCAAAAGTGAA
CTACTTATTTTTGTCACACCTAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(412-570)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.7

100

0.78
  pilQ Vibrio cholerae strain A1552

77.7

100

0.78
  pilQ Vibrio campbellii strain DS40M4

78.843

96.678

0.762
  pilQ Legionella pneumophila strain Lp02

42.308

95.455

0.404
  pilQ Legionella pneumophila strain ERS1305867

42.308

95.455

0.404
  pilQ Pseudomonas aeruginosa PAK

41.261

97.028

0.4
  comQ Acinetobacter baylyi ADP1

38.986

100

0.39
  pilQ Acinetobacter baumannii D1279779

37.997

100

0.385
  pilQ Acinetobacter baumannii strain A118

37.997

100

0.385

Multiple sequence alignment