Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OCV44_RS01280 Genome accession   NZ_AP025510
Coordinates   286989..287510 (+) Length   173 a.a.
NCBI ID   WP_390903455.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281989..292510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS01260 - 282050..284608 (-) 2559 WP_170213728.1 penicillin-binding protein 1A -
  OCV44_RS01265 pilM 284760..285785 (+) 1026 WP_139685156.1 type IV pilus assembly protein PilM Machinery gene
  OCV44_RS01270 pilN 285769..286383 (+) 615 WP_139685157.1 PilN domain-containing protein Machinery gene
  OCV44_RS01275 pilO 286376..287005 (+) 630 WP_139685158.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV44_RS01280 pilP 286989..287510 (+) 522 WP_390903455.1 pilus assembly protein PilP Machinery gene
  OCV44_RS01285 pilQ 287546..289264 (+) 1719 WP_139685159.1 type IV pilus secretin PilQ Machinery gene
  OCV44_RS01290 aroK 289441..289959 (+) 519 WP_009848907.1 shikimate kinase AroK -
  OCV44_RS01295 aroB 289984..291072 (+) 1089 WP_012604944.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19417.71 Da        Isoelectric Point: 10.7344

>NTDB_id=92348 OCV44_RS01280 WP_390903455.1 286989..287510(+) (pilP) [Vibrio tasmaniensis strain LMG 20012]
MMKFSSVFFSLLLLLVLSGCKANQESLEDFVVQVEAKARKEVEHLIPATEFVAATYQRRTFRPPFELPKEAMVQNQPLVK
KDCWQPSARSRNGKLEKYPLSKLRLRGVMGSGTSVSGLVQTPKGNVVNVKKGQFIGLNNGRVTKVTSQYVQINETLPDGL
GCWHKRNVRLALK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=92348 OCV44_RS01280 WP_390903455.1 286989..287510(+) (pilP) [Vibrio tasmaniensis strain LMG 20012]
ATGATGAAATTCAGTAGCGTCTTTTTTTCCCTATTGTTACTGCTTGTGCTTTCAGGCTGTAAAGCCAACCAGGAGTCGTT
AGAAGATTTTGTGGTGCAAGTTGAAGCTAAGGCGAGAAAAGAGGTAGAGCACCTCATTCCTGCTACGGAGTTTGTCGCGG
CAACTTATCAGCGGCGCACCTTTCGTCCTCCCTTTGAACTTCCTAAAGAAGCCATGGTGCAAAATCAACCCTTGGTGAAG
AAAGACTGCTGGCAGCCGAGCGCACGCTCTCGCAATGGCAAGCTAGAAAAATACCCGCTGAGTAAGCTGCGTTTAAGAGG
CGTAATGGGCAGTGGAACAAGCGTTTCAGGGTTAGTACAAACCCCAAAAGGGAACGTGGTCAATGTGAAAAAAGGTCAGT
TTATTGGCTTAAACAATGGTCGAGTTACTAAGGTGACGAGCCAGTACGTACAGATTAATGAAACCCTTCCAGATGGCTTA
GGTTGTTGGCATAAGCGCAACGTTAGGCTCGCTCTGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

62.209

99.422

0.618
  pilP Vibrio campbellii strain DS40M4

55.422

95.954

0.532

Multiple sequence alignment