Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   OCV44_RS01265 Genome accession   NZ_AP025510
Coordinates   284760..285785 (+) Length   341 a.a.
NCBI ID   WP_139685156.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 279760..290785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS01250 - 280098..280826 (-) 729 WP_009848898.1 glutathione peroxidase -
  OCV44_RS22230 - 280871..281050 (-) 180 WP_017099997.1 hypothetical protein -
  OCV44_RS01255 oxyR 281049..281942 (+) 894 WP_009848900.1 DNA-binding transcriptional regulator OxyR -
  OCV44_RS01260 - 282050..284608 (-) 2559 WP_170213728.1 penicillin-binding protein 1A -
  OCV44_RS01265 pilM 284760..285785 (+) 1026 WP_139685156.1 type IV pilus assembly protein PilM Machinery gene
  OCV44_RS01270 pilN 285769..286383 (+) 615 WP_139685157.1 PilN domain-containing protein Machinery gene
  OCV44_RS01275 pilO 286376..287005 (+) 630 WP_139685158.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV44_RS01280 pilP 286989..287510 (+) 522 WP_390903455.1 pilus assembly protein PilP Machinery gene
  OCV44_RS01285 pilQ 287546..289264 (+) 1719 WP_139685159.1 type IV pilus secretin PilQ Machinery gene
  OCV44_RS01290 aroK 289441..289959 (+) 519 WP_009848907.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 38255.67 Da        Isoelectric Point: 6.0520

>NTDB_id=92345 OCV44_RS01265 WP_139685156.1 284760..285785(+) (pilM) [Vibrio tasmaniensis strain LMG 20012]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANYTLEYQKTVKKLKELRKGLPFGCRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTTSYQIYATRKEVVDSRADALNKAGFKP
VVIDTQAHGLLNIWQLASRLYPEKSNWLLVDVGVDQTSLGIIPQDSAPFYKDIAFGTQDLRGTDSPSYTEGVFGNAEDTH
RFIVNLVEKLKRQLQLYSSVNALEPISGIWLMGEGTSIPMVAEDLERHFQMSCESLNPLSLFEDKVAKRHRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=92345 OCV44_RS01265 WP_139685156.1 284760..285785(+) (pilM) [Vibrio tasmaniensis strain LMG 20012]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCCGTGGTACTAAAACCCGTGGGGGAGTT
GTATGCCCTGGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACTATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTTAAAGAACTTAGGAAAGGACTGCCTTTTGGCTGTCGCAACGTCGCCATTTCGGTACCCGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGTGAGTTAGAAGACAGAGAAAAAGAGTTTTCTATCTATCAAACCTTTGCTCA
TCAATCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGATCGACAA
CTAGCTATCAGATATATGCGACTCGTAAGGAAGTTGTAGACAGTCGAGCGGATGCTTTAAATAAAGCCGGATTTAAACCT
GTTGTCATCGACACCCAAGCACATGGTCTGCTCAATATTTGGCAGTTGGCTTCACGCCTTTATCCTGAAAAAAGTAACTG
GTTGCTGGTGGACGTGGGAGTTGATCAAACATCGTTAGGCATTATCCCGCAGGATTCAGCACCTTTCTATAAAGACATCG
CCTTTGGTACTCAAGATCTTCGCGGTACTGACAGCCCCAGTTATACAGAAGGCGTGTTCGGCAACGCAGAGGACACACAT
CGGTTTATTGTCAATTTGGTTGAAAAGCTTAAGCGACAGTTGCAACTCTATTCCTCAGTGAATGCGCTTGAGCCGATATC
CGGGATCTGGCTGATGGGCGAAGGAACCAGCATTCCGATGGTAGCTGAAGATCTTGAGCGCCATTTTCAGATGAGTTGTG
AATCGCTCAATCCTTTATCGTTATTTGAGGACAAAGTGGCGAAGCGGCACCGCCTGCCGATGGACTGGCAACACTTTGGC
ATTGCCGCGGGTATGGCGATGAGTGGACTCAAATGGCAAGGAGAGAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

53.687

99.413

0.534
  pilM Vibrio campbellii strain DS40M4

47.661

100

0.478

Multiple sequence alignment