Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   QUE82_RS08440 Genome accession   NZ_AP028059
Coordinates   1602362..1602811 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. natto strain NARUSE     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597362..1607811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE82_RS08400 (BSNN_16190) ctaE 1597378..1598001 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  QUE82_RS08405 (BSNN_16200) ctaF 1598004..1598336 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  QUE82_RS08410 (BSNN_16210) ctaG 1598364..1599257 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  QUE82_RS08415 (BSNN_16220) ylbA 1599289..1599651 (-) 363 WP_014479712.1 YugN family protein -
  QUE82_RS08420 (BSNN_16230) ylbB 1599791..1600237 (+) 447 WP_003221362.1 CBS domain-containing protein -
  QUE82_RS08425 (BSNN_16240) ylbC 1600321..1601361 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  QUE82_RS08430 (BSNN_16250) ylbD 1601593..1601991 (+) 399 WP_003232233.1 YlbD family protein -
  QUE82_RS08435 (BSNN_16260) ylbE 1602007..1602246 (+) 240 WP_003232231.1 YlbE-like family protein -
  QUE82_RS08440 (BSNN_16270) ylbF 1602362..1602811 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QUE82_RS08445 (BSNN_16280) ylbG 1602866..1603138 (+) 273 WP_009967171.1 YlbG family protein -
  QUE82_RS08450 (BSNN_16290) rsmD 1603461..1604015 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QUE82_RS08455 (BSNN_16300) coaD 1604020..1604505 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QUE82_RS08460 (BSNN_16310) spoVV 1604516..1605742 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  QUE82_RS08465 (BSNN_16320) ylbK 1605923..1606705 (+) 783 WP_003232221.1 patatin family protein -
  QUE82_RS08470 (BSNN_16330) sepM 1606707..1607732 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=92345 QUE82_RS08440 WP_003221370.1 1602362..1602811(+) (ylbF) [Bacillus subtilis subsp. natto strain NARUSE]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=92345 QUE82_RS08440 WP_003221370.1 1602362..1602811(+) (ylbF) [Bacillus subtilis subsp. natto strain NARUSE]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment