Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU90_RS15960 Genome accession   NZ_AP025508
Coordinates   3545046..3545678 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio splendidus strain LMG 19031     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3540046..3550678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS15940 - 3541808..3542278 (+) 471 WP_004729647.1 TIGR02444 family protein -
  OCU90_RS15945 - 3542555..3543547 (+) 993 WP_054542272.1 hydrolase -
  OCU90_RS15950 - 3543647..3543859 (+) 213 WP_004729649.1 YheU family protein -
  OCU90_RS15955 - 3543937..3544806 (+) 870 WP_004729650.1 phosphoribulokinase -
  OCU90_RS15960 crp 3545046..3545678 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU90_RS15965 - 3545862..3546653 (-) 792 WP_004729652.1 DUF1338 domain-containing protein -
  OCU90_RS15970 astD 3546866..3548323 (-) 1458 WP_017085988.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU90_RS15975 astA 3548363..3549382 (-) 1020 WP_004729654.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=92324 OCU90_RS15960 WP_004729651.1 3545046..3545678(+) (crp) [Vibrio splendidus strain LMG 19031]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=92324 OCU90_RS15960 WP_004729651.1 3545046..3545678(+) (crp) [Vibrio splendidus strain LMG 19031]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATTGGTGAACTTGGCCTCTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAATCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment