Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV12_RS14725 Genome accession   NZ_AP025506
Coordinates   3312350..3312982 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio pomeroyi strain LMG 20537     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3307350..3317982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS14705 - 3309064..3309534 (+) 471 WP_261884949.1 TIGR02444 family protein -
  OCV12_RS14710 - 3309829..3310821 (+) 993 WP_017632109.1 hydrolase -
  OCV12_RS14715 - 3310951..3311163 (+) 213 WP_017632108.1 YheU family protein -
  OCV12_RS14720 - 3311241..3312110 (+) 870 WP_017632107.1 phosphoribulokinase -
  OCV12_RS14725 crp 3312350..3312982 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV12_RS14730 - 3313172..3313963 (-) 792 WP_261884950.1 DUF1338 domain-containing protein -
  OCV12_RS14735 astD 3314178..3315635 (-) 1458 WP_261884951.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV12_RS14740 astA 3315675..3316694 (-) 1020 WP_016796008.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=92279 OCV12_RS14725 WP_004410522.1 3312350..3312982(+) (crp) [Vibrio pomeroyi strain LMG 20537]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=92279 OCV12_RS14725 WP_004410522.1 3312350..3312982(+) (crp) [Vibrio pomeroyi strain LMG 20537]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTAGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGTCTTTCAGCGCAAATGGCAAGCCGCCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment