Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   vsple_RS12810 Genome accession   NZ_AP025503
Coordinates   2874080..2874712 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio pelagius strain ATCC 25916     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2869080..2879712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vsple_RS12790 - 2870986..2871474 (+) 489 WP_261882175.1 TIGR02444 family protein -
  vsple_RS12795 - 2871617..2872594 (+) 978 WP_255229775.1 hydrolase -
  vsple_RS12800 - 2872679..2872891 (+) 213 WP_255229774.1 YheU family protein -
  vsple_RS12805 - 2872969..2873838 (+) 870 WP_255229773.1 phosphoribulokinase -
  vsple_RS12810 crp 2874080..2874712 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  vsple_RS12815 - 2874876..2875667 (-) 792 WP_261882176.1 DUF1338 domain-containing protein -
  vsple_RS12820 astD 2875875..2877332 (-) 1458 WP_261882177.1 succinylglutamate-semialdehyde dehydrogenase -
  vsple_RS12825 astA 2877365..2878384 (-) 1020 WP_261883170.1 arginine N-succinyltransferase -
  vsple_RS12830 - 2878494..2879705 (-) 1212 WP_261882178.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=92238 vsple_RS12810 WP_004410522.1 2874080..2874712(+) (crp) [Vibrio pelagius strain ATCC 25916]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=92238 vsple_RS12810 WP_004410522.1 2874080..2874712(+) (crp) [Vibrio pelagius strain ATCC 25916]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGTACTCTGATTCACGCTGGTGAAAAGGCAGAGACCCTGTACTACATCGTGAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATTCTTTCTTACCTAAACCAAGGCGACTTTATCGGCGAGCTTGGCCTATTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCGGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGTCTTTCTGCTCAAATGGCAAGCCGTCTACAAGTTACCAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTTACTGGCCGTATTGCACAAACGCTACTAAACCTAGCGAAACAACCTGATGCGATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAGATTGTTGGCTGTTCGCGCGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAAAACCTAATTTCTGCTCACGGTAAAACTATCGTTGTTTACGGTACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment