Detailed information NTG0921814

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: VP719_RS10530
• Genome accession: NZ_CP142121
• Coordinates: 2270025..2272259 (+)
• Length: 744 a.a.
• NCBI ID: WP_325985705.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain ZF509
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2265025..2277259

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VP719_RS10505 (VP719_10505)	-	2266150..2266809 (+)	660	WP_232644428.1	transglutaminase-like domain-containing protein	-
VP719_RS10510 (VP719_10510)	-	2266852..2267475 (+)	624	WP_041116771.1	glutathione S-transferase	-
VP719_RS10515 (VP719_10515)	-	2267608..2268540 (+)	933	WP_011060096.1	ABC transporter ATP-binding protein	-
VP719_RS10520 (VP719_10520)	-	2268537..2269316 (+)	780	WP_011060097.1	ABC transporter permease	-
VP719_RS10525 (VP719_10525)	-	2269370..2269885 (-)	516	WP_015634695.1	DUF2062 domain-containing protein	-
VP719_RS10530 (VP719_10530)	comA	2270025..2272259 (+)	2235	WP_325985705.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
VP719_RS10535 (VP719_10535)	exbB	2272358..2272993 (+)	636	WP_011060100.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
VP719_RS10540 (VP719_10540)	-	2272990..2273418 (+)	429	WP_011060101.1	ExbD/TolR family protein	-
VP719_RS10545 (VP719_10545)	lpxK	2273418..2274428 (+)	1011	WP_015634697.1	tetraacyldisaccharide 4'-kinase	-
VP719_RS10550 (VP719_10550)	-	2274453..2274638 (+)	186	WP_011060103.1	Trm112 family protein	-
VP719_RS10555 (VP719_10555)	kdsB	2274635..2275399 (+)	765	WP_011060104.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
VP719_RS10560 (VP719_10560)	-	2275399..2275863 (+)	465	WP_041116777.1	low molecular weight protein-tyrosine-phosphatase	-
VP719_RS10565 (VP719_10565)	murB	2275860..2276879 (+)	1020	WP_011060106.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81456.88 Da
• Isoelectric Point: 10.7937

>NTDB_id=921814 VP719_RS10530 WP_325985705.1 2270025..2272259(+) (comA) [Pseudomonas protegens strain ZF509]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLEAQTRWLEG
RVSGLPEQAGGVVRFELEDAQARREQLPRRMRLAWREGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLSRHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAVGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLPVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GVFGAAHGLREQRRFWREPPACLK

Nucleotide

• Length: 2235 bp

>NTDB_id=921814 VP719_RS10530 WP_325985705.1 2270025..2272259(+) (comA) [Pseudomonas protegens strain ZF509]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCAGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTGTCCGCGCAGTCGGCCCTGGATGATCGCCTGGCGCCGCGCCTGGAGGCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCAGCT
GCCTCGGCGCATGCGGCTGGCCTGGCGTGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCTCAGGGGCGCGGTGCGGGGTTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACTTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGTCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCGTTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGCCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGAGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCTGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAGCCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCGGCGGCGACCGACGGCA
ATCAGGCCTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTTACCGGGGACATCGACGCTCGTGCCGAA
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCACCCCATCACGGCAGCCGTACCTCTTCATC
CATGGCCTTGCTGCAGCGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGTCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGCGCCGAACAGGGTGCCCTGAGGCTGCAACTG
GGGGTCTTCGGGGCGGCACATGGCCTTCGCGAGCAGCGGCGATTCTGGCGTGAGCCGCCCGCATGCCTTAAATAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.296	96.371	0.62
comA	Ralstonia pseudosolanacearum GMI1000	32.893	100	0.368