Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VP719_RS10535 Genome accession   NZ_CP142121
Coordinates   2272358..2272993 (+) Length   211 a.a.
NCBI ID   WP_011060100.1    Uniprot ID   A0A2C9EIY8
Organism   Pseudomonas protegens strain ZF509     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267358..2277993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP719_RS10515 (VP719_10515) - 2267608..2268540 (+) 933 WP_011060096.1 ABC transporter ATP-binding protein -
  VP719_RS10520 (VP719_10520) - 2268537..2269316 (+) 780 WP_011060097.1 ABC transporter permease -
  VP719_RS10525 (VP719_10525) - 2269370..2269885 (-) 516 WP_015634695.1 DUF2062 domain-containing protein -
  VP719_RS10530 (VP719_10530) comA 2270025..2272259 (+) 2235 WP_325985705.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VP719_RS10535 (VP719_10535) exbB 2272358..2272993 (+) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VP719_RS10540 (VP719_10540) - 2272990..2273418 (+) 429 WP_011060101.1 ExbD/TolR family protein -
  VP719_RS10545 (VP719_10545) lpxK 2273418..2274428 (+) 1011 WP_015634697.1 tetraacyldisaccharide 4'-kinase -
  VP719_RS10550 (VP719_10550) - 2274453..2274638 (+) 186 WP_011060103.1 Trm112 family protein -
  VP719_RS10555 (VP719_10555) kdsB 2274635..2275399 (+) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VP719_RS10560 (VP719_10560) - 2275399..2275863 (+) 465 WP_041116777.1 low molecular weight protein-tyrosine-phosphatase -
  VP719_RS10565 (VP719_10565) murB 2275860..2276879 (+) 1020 WP_011060106.1 UDP-N-acetylmuramate dehydrogenase -
  VP719_RS10570 (VP719_10570) - 2277122..2277592 (+) 471 WP_011060107.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23033.21 Da        Isoelectric Point: 7.4247

>NTDB_id=921815 VP719_RS10535 WP_011060100.1 2272358..2272993(+) (exbB) [Pseudomonas protegens strain ZF509]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHILAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=921815 VP719_RS10535 WP_011060100.1 2272358..2272993(+) (exbB) [Pseudomonas protegens strain ZF509]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCTGCCGTGGGCATCATTGC
CGAGCGTCTGTGGACCCTACGGGCCAGCCGTGTCACCCCGCCCCACCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGAAAAACTCAAGGAACTGCGCGCCGATTCGCCCCTGGGCGAGATTCTGGCGGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCTGCCGCCCGGGTCATCCATGAGCTGGAACGCTACCT
CAACGCCCTCGGCACCATTGCCGCTATGGCACCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCGCACATCCTCGCAGGCGGTATTTCCAAAGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGCATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9EIY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877