Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV49_RS01245 Genome accession   NZ_AP025499
Coordinates   277729..278361 (-) Length   210 a.a.
NCBI ID   WP_261891142.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 272729..283361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS01230 astA 273975..274994 (+) 1020 WP_009848917.1 arginine N-succinyltransferase -
  OCV49_RS01235 astD 275034..276491 (+) 1458 WP_192853355.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV49_RS01240 - 276746..277537 (+) 792 WP_192853356.1 DUF1338 domain-containing protein -
  OCV49_RS01245 crp 277729..278361 (-) 633 WP_261891142.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV49_RS01250 - 278603..279472 (-) 870 WP_004729650.1 phosphoribulokinase -
  OCV49_RS01255 - 279550..279762 (-) 213 WP_004729649.1 YheU family protein -
  OCV49_RS01260 - 279872..280939 (-) 1068 WP_192853357.1 hydrolase -
  OCV49_RS01265 - 281144..281614 (-) 471 WP_192853358.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23579.38 Da        Isoelectric Point: 7.8387

>NTDB_id=92175 OCV49_RS01245 WP_261891142.1 277729..278361(-) (crp) [Vibrio lentus strain LMG 21034]
MVLGKPQTAPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=92175 OCV49_RS01245 WP_261891142.1 277729..278361(-) (crp) [Vibrio lentus strain LMG 21034]
ATGGTTCTAGGTAAACCTCAAACCGCTCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCTGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAACTTGGACTTTTCGAAGAAGAC
CAAGAGCGTACTGCGTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTGATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTTACCGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACCGTAGGTCGTAT
CTTGAAGATGCTTGAAGAGCAGAACCTAATTTCTGCACACGGTAAGACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment