Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VP461_RS00645 Genome accession   NZ_CP142100
Coordinates   136394..136777 (+) Length   127 a.a.
NCBI ID   WP_024438036.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A20AB13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 131394..141777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP461_RS00635 (VP461_00635) - 134295..135413 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  VP461_RS00640 (VP461_00640) - 135473..136111 (-) 639 WP_001989943.1 hypothetical protein -
  VP461_RS00645 (VP461_00645) pilG 136394..136777 (+) 384 WP_024438036.1 twitching motility response regulator PilG Regulator
  VP461_RS00650 (VP461_00650) - 136801..137163 (+) 363 WP_000101096.1 PleD family two-component system response regulator -
  VP461_RS00655 (VP461_00655) - 137224..137760 (+) 537 WP_000729757.1 chemotaxis protein CheW -
  VP461_RS00660 (VP461_00660) - 137807..139885 (+) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14181.18 Da        Isoelectric Point: 4.5746

>NTDB_id=921523 VP461_RS00645 WP_024438036.1 136394..136777(+) (pilG) [Acinetobacter baumannii strain A20AB13]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGHVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=921523 VP461_RS00645 WP_024438036.1 136394..136777(+) (pilG) [Acinetobacter baumannii strain A20AB13]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTCTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCATGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

99.213

100

0.992
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37