Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VPH48_RS19195 Genome accession   NZ_CP142041
Coordinates   4293551..4295764 (-) Length   737 a.a.
NCBI ID   WP_324740146.1    Uniprot ID   -
Organism   Pseudomonas veronii strain T1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4288551..4300764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPH48_RS19160 (VPH48_19160) murB 4288921..4289940 (-) 1020 WP_046382928.1 UDP-N-acetylmuramate dehydrogenase -
  VPH48_RS19165 (VPH48_19165) - 4289937..4290401 (-) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  VPH48_RS19170 (VPH48_19170) kdsB 4290401..4291165 (-) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VPH48_RS19175 (VPH48_19175) - 4291162..4291347 (-) 186 WP_003174668.1 Trm112 family protein -
  VPH48_RS19180 (VPH48_19180) lpxK 4291371..4292381 (-) 1011 WP_126585729.1 tetraacyldisaccharide 4'-kinase -
  VPH48_RS19185 (VPH48_19185) - 4292381..4292809 (-) 429 WP_046382925.1 ExbD/TolR family protein -
  VPH48_RS19190 (VPH48_19190) exbB 4292806..4293441 (-) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VPH48_RS19195 (VPH48_19195) comA 4293551..4295764 (-) 2214 WP_324740146.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VPH48_RS19200 (VPH48_19200) - 4295912..4296427 (+) 516 WP_017848016.1 DUF2062 domain-containing protein -
  VPH48_RS19205 (VPH48_19205) - 4296431..4297801 (-) 1371 WP_104902889.1 sensor histidine kinase -
  VPH48_RS19210 (VPH48_19210) - 4297788..4298516 (-) 729 WP_126588667.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79819.57 Da        Isoelectric Point: 10.2505

>NTDB_id=921252 VPH48_RS19195 WP_324740146.1 4293551..4295764(-) (comA) [Pseudomonas veronii strain T1]
MFALALGLLALRFLPALPSAGMLLALAVVALMLLPFRTYPLAFFLFGLCWACVSAQWALDDRLRPPLDGQTRWLEGRVSG
LPQQTDSGVRFELSDSRSRNARLPARIRLYWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATGSVKD
GERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLTADDWRVLQDTGTVHLLVISGQHIGLLAGLIYALVAAL
ARYGCWPRTWPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPLASLQ
PGFWLSFAAVAVLGLTFGGRLGRWSAWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGTA
LLAVPFVGAGLLWLAGGALDGLFNALALLAGQLPAWIPAEVPMGYWLVSLVGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
EPVPRGQVDVLQLDVGQGLALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKRLGVDALDMMLLSHADADHAGGAAAVA
RGLSIKRVVGGETEGLPALLDTQPCISGEQWAWDGVSFELWQWPDAVDGNPKSCVLHVQANGERLLLTGDIDRAAEQAFL
ASTLAVPTDWLQAPHHGSRSSSSWPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGTQVYDSAEQGAVRLRLGAFA
PPIVARSQRRFWREALP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=921252 VPH48_RS19195 WP_324740146.1 4293551..4295764(-) (comA) [Pseudomonas veronii strain T1]
ATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGTCTGCCGGGATGCTGTTGGCCCTGGC
AGTGGTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTGTGTTGGGCATGTGTGA
GCGCGCAGTGGGCGCTGGATGACCGCTTGCGTCCGCCGCTCGACGGCCAGACGCGTTGGCTGGAGGGGCGTGTGAGCGGG
TTGCCGCAGCAGACTGACAGCGGCGTGCGTTTCGAACTGAGCGACAGCCGGTCGCGCAACGCCCGCTTGCCCGCGCGTAT
TCGGCTGTACTGGCACGGTGGCCCACCGGTACGCAGCGGTGAGCGTTGGCGCCTCGCGGTGACGCTTAAACGTCCGTCGG
GGCTGCTCAACTTCCATGGCGTCGACCATGAAGCCTGGCTGCTCGCCCAGCGCATCGGTGCCACCGGCTCGGTAAAGGAC
GGCGAACGCCTGGCGCCGGCCCGCAATGCTTGGCGCGATGCGGTCCGTCAGCGCTTGATGGCGGTGGACGCCCAAGGGCG
CGAGGCGGGGTTGGCGGCCCTGGTGCTGGGGGACGGCTCCGGGCTGACGGCCGACGACTGGCGTGTCTTGCAGGACACCG
GCACAGTGCATTTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCGGGGTTGATCTATGCGCTCGTCGCCGCTCTG
GCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCGTGTGGCCTGGCGTTTACCGCGGCGTTGGGGTA
CGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGTGTAATGGTGGGGCTGGTGTTGCTGTGGCGTTTGCGTT
TCCGTCATCTGGGCATCTGGTGGCCGCTGTTGCTGGCGTTCAATGGTGTGCTGATCCTTGAACCCTTGGCCAGCTTGCAG
CCGGGGTTCTGGTTGTCCTTTGCGGCCGTGGCGGTACTGGGGCTGACGTTCGGCGGTCGGTTAGGCCGCTGGAGCGCTTG
GCAGGCATGGACCCGTCCGCAATGGTTGATAGCCATCGGTCTTTTCCCGGTGTTGCTGGTGCTGGGTTTGCCCATCAGCC
TCAGCGCGCCGCTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCCTGCTCGGGACGGCA
TTGCTGGCGGTGCCGTTCGTGGGCGCGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTGGACGGCTTGTTCAACGCCCTGGC
GCTGCTGGCGGGGCAATTGCCCGCGTGGATACCGGCCGAGGTGCCCATGGGCTATTGGCTGGTTAGCCTGGTCGGTGCGG
TGTTGCTGTTGCTGCCCAAGGGTGTGCCGTTTCGGCTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTGTTCCCGCCGCGC
GAGCCGGTGCCCCGCGGGCAGGTGGACGTACTGCAACTGGATGTCGGGCAGGGGCTGGCATTGATCCTGCGCACCCGCCA
TCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTCGATCTCGGCGCGCGGGTGGTGTTGCCGTCGCTGAAGA
GGCTTGGGGTAGACGCTCTGGACATGATGTTACTGAGCCATGCCGATGCCGATCACGCCGGCGGTGCGGCGGCTGTCGCC
CGTGGACTGTCGATCAAACGGGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCGCTTCTCGACACTCAGCCTTGTATCAG
CGGTGAACAATGGGCGTGGGACGGCGTGTCCTTTGAATTGTGGCAATGGCCAGACGCAGTTGATGGCAACCCCAAATCCT
GTGTATTGCACGTACAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGATCGCGCCGCAGAGCAGGCGTTTCTG
GCCTCGACCCTGGCGGTGCCGACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCGCAGTTCGTCATCCTGGCCGTTTCT
GCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCTCATCCACAGGTGGTGG
AGCGCTATCAAGCGTTGGGAACGCAGGTGTATGACAGCGCCGAACAGGGCGCGGTACGTTTGCGATTGGGCGCCTTCGCG
CCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGCTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-661)

Domain of unknown function (DUF4131) (DUF4131)

(18-163)

Competence protein (Competence)

(194-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.918

97.558

0.594
  comA Ralstonia pseudosolanacearum GMI1000

34.777

100

0.37