Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VPH48_RS19190 Genome accession   NZ_CP142041
Coordinates   4292806..4293441 (-) Length   211 a.a.
NCBI ID   WP_046382924.1    Uniprot ID   A0A2N7YSQ7
Organism   Pseudomonas veronii strain T1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4287806..4298441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPH48_RS19155 (VPH48_19155) - 4288175..4288846 (+) 672 WP_017848008.1 Bax inhibitor-1/YccA family protein -
  VPH48_RS19160 (VPH48_19160) murB 4288921..4289940 (-) 1020 WP_046382928.1 UDP-N-acetylmuramate dehydrogenase -
  VPH48_RS19165 (VPH48_19165) - 4289937..4290401 (-) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  VPH48_RS19170 (VPH48_19170) kdsB 4290401..4291165 (-) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VPH48_RS19175 (VPH48_19175) - 4291162..4291347 (-) 186 WP_003174668.1 Trm112 family protein -
  VPH48_RS19180 (VPH48_19180) lpxK 4291371..4292381 (-) 1011 WP_126585729.1 tetraacyldisaccharide 4'-kinase -
  VPH48_RS19185 (VPH48_19185) - 4292381..4292809 (-) 429 WP_046382925.1 ExbD/TolR family protein -
  VPH48_RS19190 (VPH48_19190) exbB 4292806..4293441 (-) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VPH48_RS19195 (VPH48_19195) comA 4293551..4295764 (-) 2214 WP_324740146.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VPH48_RS19200 (VPH48_19200) - 4295912..4296427 (+) 516 WP_017848016.1 DUF2062 domain-containing protein -
  VPH48_RS19205 (VPH48_19205) - 4296431..4297801 (-) 1371 WP_104902889.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.02 Da        Isoelectric Point: 7.3613

>NTDB_id=921251 VPH48_RS19190 WP_046382924.1 4292806..4293441(-) (exbB) [Pseudomonas veronii strain T1]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=921251 VPH48_RS19190 WP_046382924.1 4292806..4293441(-) (exbB) [Pseudomonas veronii strain T1]
GTGTGGGAATTGGTCAAATCCGGTGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCTTGCGCGCCAGCCGTGTCACACCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAACTCAAGGAACTGCGTGCCAATTCACCCCTGGGTGAAATCCTCGCGGCCGGGCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCGGCGCGGGTCATCCATGAGCTGGAGCGTTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCACCGTTGCTCGGCCTGCTGGGCACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGAGCACCAACGCTGCGGTGCTGGCGGGTGGTATCTCCAAAGCCCTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGGATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACTTGGTCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7YSQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853