Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV56_RS14640 Genome accession   NZ_AP025492
Coordinates   3247871..3248503 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio gigantis strain LMG 22741     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3242871..3253503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS14620 - 3244358..3244828 (+) 471 WP_086715751.1 TIGR02444 family protein -
  OCV56_RS14625 - 3245098..3246078 (+) 981 WP_086715753.1 hydrolase -
  OCV56_RS14630 - 3246472..3246684 (+) 213 WP_086715756.1 YheU family protein -
  OCV56_RS14635 - 3246762..3247631 (+) 870 WP_086715758.1 phosphoribulokinase -
  OCV56_RS14640 crp 3247871..3248503 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV56_RS14645 - 3248681..3249472 (-) 792 WP_086715760.1 DUF1338 domain-containing protein -
  OCV56_RS14650 astD 3249688..3251145 (-) 1458 WP_086715761.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV56_RS14655 astA 3251185..3252204 (-) 1020 WP_029405654.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=92108 OCV56_RS14640 WP_004729651.1 3247871..3248503(+) (crp) [Vibrio gigantis strain LMG 22741]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=92108 OCV56_RS14640 WP_004729651.1 3247871..3248503(+) (crp) [Vibrio gigantis strain LMG 22741]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTTGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment