Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DGAOKPDK_RS12880 Genome accession   NZ_CP142019
Coordinates   2727025..2727435 (-) Length   136 a.a.
NCBI ID   WP_001978433.1    Uniprot ID   A0A0E1JQ57
Organism   Acinetobacter baumannii strain EMB-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722025..2732435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS12850 (VOI31_RS12845) - 2722111..2722380 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  DGAOKPDK_RS12855 (VOI31_RS12850) rapZ 2722377..2723228 (-) 852 WP_000821671.1 RNase adapter RapZ -
  DGAOKPDK_RS12860 (VOI31_RS12855) panC 2723251..2724099 (-) 849 WP_324641735.1 pantoate--beta-alanine ligase -
  DGAOKPDK_RS12865 (VOI31_RS12860) panB 2724103..2724912 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  DGAOKPDK_RS12870 (VOI31_RS12865) folK 2724958..2725440 (-) 483 WP_324641736.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DGAOKPDK_RS12875 (VOI31_RS12870) pcnB 2725437..2726900 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  DGAOKPDK_RS12880 (VOI31_RS12875) comEA 2727025..2727435 (-) 411 WP_001978433.1 ComEA family DNA-binding protein Machinery gene
  DGAOKPDK_RS12885 (VOI31_RS12880) mazG 2727404..2728210 (-) 807 WP_000359484.1 nucleoside triphosphate pyrophosphohydrolase -
  DGAOKPDK_RS12890 (VOI31_RS12885) - 2728322..2729095 (+) 774 WP_000682834.1 SDR family oxidoreductase -
  DGAOKPDK_RS12895 (VOI31_RS12890) - 2729140..2731446 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15687.00 Da        Isoelectric Point: 10.4475

>NTDB_id=921059 DGAOKPDK_RS12880 WP_001978433.1 2727025..2727435(-) (comEA) [Acinetobacter baumannii strain EMB-1]
MQYSMRFWKNKYFLLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=921059 DGAOKPDK_RS12880 WP_001978433.1 2727025..2727435(-) (comEA) [Acinetobacter baumannii strain EMB-1]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1JQ57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412