Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VOI49_RS09050 Genome accession   NZ_CP142018
Coordinates   1792338..1792829 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae strain lu24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1787338..1797829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS09035 - 1790109..1791053 (+) 945 WP_111717550.1 magnesium transporter CorA family protein -
  VOI49_RS09040 - 1791185..1791844 (+) 660 WP_324738993.1 DUF1129 domain-containing protein -
  VOI49_RS09045 rpsR 1791981..1792220 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  VOI49_RS09050 ssbA 1792338..1792829 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  VOI49_RS09055 rpsF 1792851..1793141 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  VOI49_RS09060 - 1793694..1794023 (-) 330 WP_324738995.1 hypothetical protein -
  VOI49_RS09065 - 1794672..1794965 (-) 294 WP_003052683.1 hypothetical protein -
  VOI49_RS09070 mutY 1795132..1796298 (+) 1167 WP_115245695.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=921036 VOI49_RS09050 WP_002993238.1 1792338..1792829(-) (ssbA) [Streptococcus dysgalactiae strain lu24]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=921036 VOI49_RS09050 WP_002993238.1 1792338..1792829(-) (ssbA) [Streptococcus dysgalactiae strain lu24]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTTATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATTGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGCGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACACTTCATCATCGAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368