Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VIX88_RS05590 Genome accession   NZ_CP142016
Coordinates   1121647..1122300 (-) Length   217 a.a.
NCBI ID   WP_004918078.1    Uniprot ID   A0AAP6LJM8
Organism   Riemerella anatipestifer strain 59RAST107     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1116647..1127300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIX88_RS05570 (VIX88_05570) - 1117466..1118548 (-) 1083 WP_064971218.1 serine hydrolase domain-containing protein -
  VIX88_RS05575 (VIX88_05575) - 1118660..1120315 (-) 1656 WP_064971217.1 ribonucleoside-diphosphate reductase subunit alpha -
  VIX88_RS05580 (VIX88_05580) - 1120363..1121337 (-) 975 WP_064971216.1 ribonucleotide-diphosphate reductase subunit beta -
  VIX88_RS05585 (VIX88_05585) - 1121419..1121559 (+) 141 WP_015345427.1 hypothetical protein -
  VIX88_RS05590 (VIX88_05590) comF 1121647..1122300 (-) 654 WP_004918078.1 ComF family protein Machinery gene
  VIX88_RS05600 (VIX88_05600) - 1122523..1123074 (-) 552 WP_064971215.1 hypothetical protein -
  VIX88_RS05605 (VIX88_05605) - 1123129..1123779 (-) 651 WP_154212730.1 HD domain-containing protein -
  VIX88_RS05610 (VIX88_05610) - 1123801..1124679 (-) 879 WP_127919812.1 IS982-like element ISRa1 family transposase -
  VIX88_RS05615 (VIX88_05615) gdhA 1124898..1126256 (-) 1359 WP_049334426.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25339.46 Da        Isoelectric Point: 9.4150

>NTDB_id=920967 VIX88_RS05590 WP_004918078.1 1121647..1122300(-) (comF) [Riemerella anatipestifer strain 59RAST107]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=920967 VIX88_RS05590 WP_004918078.1 1121647..1122300(-) (comF) [Riemerella anatipestifer strain 59RAST107]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1