Detailed information NTG0920968

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: VIX88_RS05620
• Genome accession: NZ_CP142016
• Coordinates: 1126440..1127543 (-)
• Length: 367 a.a.
• NCBI ID: WP_049334427.1
• Uniprot ID: A0AAP3EVI0
• Organism: Riemerella anatipestifer strain 59RAST107
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1121440..1132543

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIX88_RS05590 (VIX88_05590)	comF	1121647..1122300 (-)	654	WP_004918078.1	ComF family protein	Machinery gene
VIX88_RS05600 (VIX88_05600)	-	1122523..1123074 (-)	552	WP_064971215.1	hypothetical protein	-
VIX88_RS05605 (VIX88_05605)	-	1123129..1123779 (-)	651	WP_154212730.1	HD domain-containing protein	-
VIX88_RS05610 (VIX88_05610)	-	1123801..1124679 (-)	879	WP_127919812.1	IS982-like element ISRa1 family transposase	-
VIX88_RS05615 (VIX88_05615)	gdhA	1124898..1126256 (-)	1359	WP_049334426.1	NADP-specific glutamate dehydrogenase	-
VIX88_RS05620 (VIX88_05620)	dprA	1126440..1127543 (-)	1104	WP_049334427.1	DNA-processing protein DprA	Machinery gene
VIX88_RS05625 (VIX88_05625)	-	1127546..1127923 (-)	378	WP_049334428.1	group III truncated hemoglobin	-
VIX88_RS05630 (VIX88_05630)	ruvC	1127934..1128488 (-)	555	WP_064971300.1	crossover junction endodeoxyribonuclease RuvC	-
VIX88_RS05635 (VIX88_05635)	-	1128512..1129702 (-)	1191	WP_153929505.1	carboxypeptidase-like regulatory domain-containing protein	-
VIX88_RS05640 (VIX88_05640)	-	1129714..1130193 (-)	480	WP_064969902.1	Lrp/AsnC family transcriptional regulator	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 40371.22 Da
• Isoelectric Point: 6.3958

>NTDB_id=920968 VIX88_RS05620 WP_049334427.1 1126440..1127543(-) (dprA) [Riemerella anatipestifer strain 59RAST107]
MVNAEEILYSIALRRSSLVGDVTFANLVGEVGSAKEVWSLSQSELRKISGIGKQIASGIGDESLLKFAEREVEFCIKNEI
KINLRHLNQLPRLLGECYDAPAILFQKGDYDDTANNISIVGTRNATAYGKSFLEDLIVQFKNKNIQVISGLALGTDGIAH
QEALKNNIKTSAVLAHGLHIVYPSKHKILAEEILNNGGALFSEFCSDEKPDREHFLQRNRIVAGLSANTIVVESAYAGGS
ISTASFANQYNREVYALAGRLTDKYSQGCNHLIFQNKAKIISSIKGLLKDLDLDNTSKVLELFPSVEVSLTPIQKPIYDI
IKEVNDISLDDLSEKLNQPISKVLPVLLELELLGLIRANSGRRYSIV

Nucleotide

• Length: 1104 bp

>NTDB_id=920968 VIX88_RS05620 WP_049334427.1 1126440..1127543(-) (dprA) [Riemerella anatipestifer strain 59RAST107]
ATGGTAAATGCAGAAGAAATTTTATACTCTATTGCTTTACGGCGAAGCTCTTTGGTAGGAGATGTTACATTTGCAAATTT
AGTGGGCGAAGTTGGTTCTGCTAAGGAGGTTTGGAGTTTGTCTCAATCGGAGTTAAGAAAAATATCAGGCATAGGTAAAC
AAATTGCCTCAGGTATTGGTGATGAAAGCCTTTTGAAATTTGCCGAAAGGGAAGTTGAGTTCTGCATTAAAAACGAGATA
AAAATCAATCTGAGACATCTTAATCAGCTTCCTCGTCTTTTAGGTGAATGTTATGATGCTCCAGCTATTCTTTTTCAAAA
AGGAGATTATGACGATACCGCTAATAATATTAGCATTGTTGGGACGAGAAATGCCACTGCTTATGGTAAGTCGTTTTTGG
AGGATTTAATTGTTCAGTTTAAAAATAAAAATATTCAAGTCATTAGTGGTTTAGCTTTAGGTACAGACGGAATAGCTCAT
CAAGAGGCTTTAAAAAACAATATAAAAACTTCAGCGGTTTTAGCACACGGTTTACACATTGTTTATCCGTCCAAACATAA
AATTCTCGCTGAAGAAATATTAAATAATGGTGGAGCTTTGTTTTCTGAATTCTGCTCTGATGAAAAGCCAGATAGAGAAC
ATTTTTTGCAAAGAAATCGTATTGTGGCAGGGCTTTCGGCTAATACGATTGTGGTAGAGTCTGCTTATGCAGGAGGTTCT
ATTAGTACGGCGAGTTTTGCTAATCAGTATAATAGAGAGGTGTACGCTTTGGCAGGGCGTCTTACGGATAAGTATAGCCA
AGGTTGCAATCATCTTATTTTTCAAAATAAAGCTAAAATCATATCTTCTATTAAAGGTTTGCTAAAAGACCTAGATTTGG
ATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTCGGTTGAGGTTTCTTTAACTCCTATTCAGAAGCCTATTTATGATATT
ATTAAAGAGGTTAATGATATTTCTTTGGACGACTTGTCAGAAAAGTTAAATCAACCTATTTCTAAAGTGCTTCCAGTTTT
GTTAGAATTAGAATTATTGGGATTGATAAGGGCAAATTCTGGGAGGAGATATTCTATTGTTTAG

Domains

Predicted by InterProScan.

• DNA recombination-mediator protein A (DNA_processg_A) (77-281)

• DprA winged helix domain (DprA_WH) (309-361)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Riemerella anatipestifer ATCC 11845 = DSM 15868	94.005	100	0.94