Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VDS58_RS19935 Genome accession   NZ_CP141997
Coordinates   3718016..3718339 (-) Length   107 a.a.
NCBI ID   WP_396129886.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3713016..3723339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS19920 (VDS58_19920) hepAB 3713260..3716028 (+) 2769 WP_080529895.1 DEAD/DEAH box helicase -
  VDS58_RS19925 (VDS58_19925) ywpJ 3716153..3717010 (-) 858 WP_015714842.1 phosphatase YwpJ -
  VDS58_RS19930 (VDS58_19930) glcR 3717016..3717792 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  VDS58_RS19935 (VDS58_19935) ssbB 3718016..3718339 (-) 324 WP_396129886.1 single-stranded DNA-binding protein Machinery gene
  VDS58_RS19940 (VDS58_19940) - 3718241..3718573 (+) 333 Protein_3871 YwpF-like family protein -
  VDS58_RS19945 (VDS58_19945) - 3718713..3719105 (-) 393 Protein_3872 class A sortase -
  VDS58_RS23555 - 3719167..3719319 (-) 153 Protein_3873 prealbumin-like fold domain-containing protein -
  VDS58_RS19955 (VDS58_19955) ywpD 3719353..3720188 (+) 836 Protein_3874 sensor histidine kinase -
  VDS58_RS19960 (VDS58_19960) - 3720335..3721687 (-) 1353 WP_014478984.1 IS1182 family transposase -
  VDS58_RS19965 (VDS58_19965) mscL 3721812..3722207 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  VDS58_RS19970 (VDS58_19970) fabZ 3722280..3722705 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.20 Da        Isoelectric Point: 9.3757

>NTDB_id=920757 VDS58_RS19935 WP_396129886.1 3718016..3718339(-) (ssbB) [Bacillus subtilis strain PM0031]
MKLFKKRQMFFLYKRLNQPVIFTVFFIYNQSVNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYENAE
GVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 324 bp        

>NTDB_id=920757 VDS58_RS19935 WP_396129886.1 3718016..3718339(-) (ssbB) [Bacillus subtilis strain PM0031]
TTGAAGCTGTTCAAAAAAAGACAGATGTTCTTTCTGTACAAGCGCCTCAATCAGCCAGTGATTTTCACCGTCTTCTTTAT
TTATAATCAGTCCGTCAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTTGGAGAAAAACAGCTGAAA
ACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGAAGCTATGAAAACGCGGAA
GGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACCCCGGGAAAAAGCTGCTGA
TTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(32-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.667

70.093

0.692
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.971

64.486

0.374
  ssb Latilactobacillus sakei subsp. sakei 23K

54.93

66.355

0.364