Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU78_RS13065 Genome accession   NZ_AP025490
Coordinates   2972939..2973571 (+) Length   210 a.a.
NCBI ID   WP_017036097.1    Uniprot ID   A0A7Y4ALD5
Organism   Vibrio gallaecicus strain CECT 7244     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2967939..2978571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS13045 - 2969679..2970158 (+) 480 WP_137375112.1 TIGR02444 family protein -
  OCU78_RS13050 - 2970410..2971387 (+) 978 WP_137375111.1 hydrolase -
  OCU78_RS13055 - 2971469..2971681 (+) 213 WP_137375110.1 YheU family protein -
  OCU78_RS13060 - 2971828..2972697 (+) 870 WP_137375109.1 phosphoribulokinase -
  OCU78_RS13065 crp 2972939..2973571 (+) 633 WP_017036097.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU78_RS13070 - 2973800..2974591 (-) 792 WP_137375108.1 DUF1338 domain-containing protein -
  OCU78_RS13075 astD 2974792..2976249 (-) 1458 WP_137375107.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU78_RS13080 astA 2976386..2977405 (-) 1020 WP_137375106.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23639.39 Da        Isoelectric Point: 7.4009

>NTDB_id=92064 OCU78_RS13065 WP_017036097.1 2972939..2973571(+) (crp) [Vibrio gallaecicus strain CECT 7244]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=92064 OCU78_RS13065 WP_017036097.1 2972939..2973571(+) (crp) [Vibrio gallaecicus strain CECT 7244]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAATGGTTTCTGTCACATTGTCATATTCATAAGTACCCTTCTAA
AAGCACGCTAATTCACGCTGGTGAAAAAGCGGAAACCTTGTACTACATCGTAAAAGGTTCTGTTGCGGTTCTAATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTTTCTTACCTAAACCAAGGTGACTTTATTGGTGAGCTTGGTCTATTTGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTGGCTGAAATTTCATTTAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCTTAATGCGTCTATCATCTCAAATGGCTAATCGTCTACAAGTGACTAGCCAAAAAGTAGGTG
ACTTAGCTTTCCTTGACGTGACTGGTCGTATCGCTCAAACGCTACTAAACCTAGCTAAACAGCCAGATGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAGATTGTTGGCTGTTCACGTGAGACTGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACTTAATTTCAGCTCACGGTAAGACTATCGTTGTTTACGGTACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y4ALD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment