Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   VPN06_RS00755 Genome accession   NZ_CP141950
Coordinates   139319..139657 (-) Length   112 a.a.
NCBI ID   WP_015433471.1    Uniprot ID   A0A179CX46
Organism   Bibersteinia trehalosi strain M01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134319..144657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPN06_RS00720 nlpD 134326..135540 (+) 1215 WP_324682503.1 murein hydrolase activator NlpD -
  VPN06_RS00725 - 135551..135922 (+) 372 WP_025289897.1 hypothetical protein -
  VPN06_RS00730 - 135975..136538 (+) 564 WP_125135248.1 DNA-3-methyladenine glycosylase I -
  VPN06_RS00735 - 136535..137254 (+) 720 WP_064318621.1 4'-phosphopantetheinyl transferase family protein -
  VPN06_RS00740 psiE 137258..137668 (+) 411 WP_015433468.1 phosphate-starvation-inducible protein PsiE -
  VPN06_RS00745 nudF 137683..138294 (+) 612 WP_131928892.1 ADP-ribose diphosphatase -
  VPN06_RS00750 asd 138365..139255 (-) 891 WP_324682504.1 archaetidylserine decarboxylase -
  VPN06_RS00755 comEA/comE1 139319..139657 (-) 339 WP_015433471.1 ComEA family DNA-binding protein Machinery gene
  VPN06_RS00760 - 139916..141280 (+) 1365 WP_324682505.1 LysM-like peptidoglycan-binding domain-containing protein -
  VPN06_RS00765 - 141336..141737 (+) 402 WP_324682506.1 acetylglucosamine transferase -
  VPN06_RS00770 waaF 141748..142785 (+) 1038 WP_064318617.1 lipopolysaccharide heptosyltransferase II -
  VPN06_RS00775 hemB 142795..143820 (+) 1026 WP_015433475.1 porphobilinogen synthase -
  VPN06_RS00780 - 143830..144327 (+) 498 WP_015433476.1 YbhB/YbcL family Raf kinase inhibitor-like protein -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12223.04 Da        Isoelectric Point: 8.0035

>NTDB_id=920590 VPN06_RS00755 WP_015433471.1 139319..139657(-) (comEA/comE1) [Bibersteinia trehalosi strain M01]
MKKYLRIALSSLVAFCTLSALAQTQREATHTEPVAIEQVAQAQVQNVNLVNLNTATAAEIQDKLVGIGAKKAQAIVEYRE
KNGNFISLEQLTEVSGIGKATLDKNRDRLVLE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=920590 VPN06_RS00755 WP_015433471.1 139319..139657(-) (comEA/comE1) [Bibersteinia trehalosi strain M01]
ATGAAAAAATATCTGCGTATTGCGCTTTCTTCCCTTGTGGCATTTTGTACGCTATCTGCTTTAGCACAAACGCAACGTGA
AGCAACACATACTGAACCGGTTGCTATTGAGCAAGTTGCGCAGGCTCAGGTACAGAATGTCAATTTAGTTAATCTGAATA
CAGCAACGGCGGCTGAAATTCAAGATAAATTAGTCGGTATTGGTGCGAAAAAAGCGCAAGCGATAGTAGAATATCGCGAG
AAAAATGGCAATTTTATTAGCCTTGAACAGCTCACGGAAGTTTCTGGTATTGGTAAAGCAACACTAGATAAGAACCGCGA
TCGCCTTGTATTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A179CX46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

62.281

100

0.634
  comE1/comEA Haemophilus influenzae Rd KW20

56.122

87.5

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

45

89.286

0.402