Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   VK748_RS05360 Genome accession   NZ_CP141948
Coordinates   1113525..1114862 (+) Length   445 a.a.
NCBI ID   WP_061560713.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5.41a     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1108525..1119862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK748_RS05335 (VK748_05335) pgeF 1108718..1109446 (-) 729 WP_324710587.1 peptidoglycan editing factor PgeF -
  VK748_RS05340 (VK748_05340) rluD 1109443..1110402 (-) 960 WP_324710588.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VK748_RS05345 (VK748_05345) - 1110549..1111562 (+) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  VK748_RS05350 (VK748_05350) - 1111701..1111931 (+) 231 WP_009617584.1 PP0621 family protein -
  VK748_RS05355 (VK748_05355) pilS 1111924..1113513 (+) 1590 WP_043273654.1 sensor histidine kinase Regulator
  VK748_RS05360 (VK748_05360) pilR 1113525..1114862 (+) 1338 WP_061560713.1 sigma-54-dependent transcriptional regulator Regulator
  VK748_RS05365 (VK748_05365) thiO 1114907..1116016 (-) 1110 WP_061560712.1 glycine oxidase ThiO -
  VK748_RS05370 (VK748_05370) - 1116195..1116707 (+) 513 WP_324710589.1 GspH/FimT family protein -
  VK748_RS05375 (VK748_05375) - 1116857..1117336 (+) 480 WP_061560711.1 GspH/FimT family pseudopilin -
  VK748_RS05380 (VK748_05380) pilV 1117333..1117887 (+) 555 WP_061560710.1 type IV pilus modification protein PilV -
  VK748_RS05385 (VK748_05385) - 1117899..1118678 (+) 780 WP_061560709.1 PilW family protein -
  VK748_RS05390 (VK748_05390) - 1118675..1119208 (+) 534 WP_043273643.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49565.83 Da        Isoelectric Point: 5.6352

>NTDB_id=920539 VK748_RS05360 WP_061560713.1 1113525..1114862(+) (pilR) [Pseudomonas citronellolis strain G5.41a]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLANDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPQDLRFAEATGGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=920539 VK748_RS05360 WP_061560713.1 1113525..1114862(+) (pilR) [Pseudomonas citronellolis strain G5.41a]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAAGACGCGCCGGTGGACAACC
GCCTGCTGGGCGACTCGCCGCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAGCAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGTGGCGCCATTCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAATGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCC
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAAGCCGTGCGCGCGGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGCGTGCTCTGTGCCACCCACAAGGACCTGGCTGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCTCTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAACGACAGCGGCCTGGCCGCGGCGCAGGTCAGCCCCGAAGCCCTGGAAAAGCTCAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAAGACGATGTCATCCAGCCCC
AGGACCTGCGTTTCGCCGAGGCCACCGGCGGCGGCGAAAGCGGCGAGGCCAGCCTGGCGCAGATCGACAACCTCGAGGAC
TACCTCGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAACCGTACCGCCGCGGCCCAGCG
GCTGGGGCTGACGTTCCGTTCGATGCGCTATCGCTTGAAGAAGCTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.764

100

0.888
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515