Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VK748_RS00130 Genome accession   NZ_CP141948
Coordinates   22839..25046 (-) Length   735 a.a.
NCBI ID   WP_324711448.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5.41a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17839..30046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK748_RS00095 (VK748_00095) murB 18202..19221 (-) 1020 WP_324710190.1 UDP-N-acetylmuramate dehydrogenase -
  VK748_RS00100 (VK748_00100) - 19218..19679 (-) 462 WP_324710191.1 low molecular weight protein-tyrosine-phosphatase -
  VK748_RS00105 (VK748_00105) kdsB 19679..20443 (-) 765 WP_324710192.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VK748_RS00110 (VK748_00110) - 20464..20649 (-) 186 WP_009621404.1 Trm112 family protein -
  VK748_RS00115 (VK748_00115) lpxK 20690..21688 (-) 999 WP_043267277.1 tetraacyldisaccharide 4'-kinase -
  VK748_RS00120 (VK748_00120) - 21688..22134 (-) 447 WP_009621400.1 ExbD/TolR family protein -
  VK748_RS00125 (VK748_00125) exbB 22131..22766 (-) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VK748_RS00130 (VK748_00130) comA 22839..25046 (-) 2208 WP_324711448.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VK748_RS00135 (VK748_00135) - 25183..25713 (+) 531 WP_064582526.1 DUF2062 domain-containing protein -
  VK748_RS00140 (VK748_00140) - 26300..27550 (-) 1251 WP_324710193.1 lipoprotein-releasing ABC transporter permease subunit -
  VK748_RS00145 (VK748_00145) lolD 27567..28250 (-) 684 WP_009621390.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VK748_RS00150 (VK748_00150) - 28243..29496 (-) 1254 WP_009621388.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 78526.78 Da        Isoelectric Point: 8.0632

>NTDB_id=920532 VK748_RS00130 WP_324711448.1 22839..25046(-) (comA) [Pseudomonas citronellolis strain G5.41a]
MMALACGLLLLRFLPQLPPLAALLPLVGMALLCLYRRHHAVALFLLGFAWACLFAHDSWEGRLAPELDGRTLWLEGQVAG
LPAAADGIVRFELEDVQARLDLPGRIRVSWYGGPEVRAGERWRLAVTLRRPHGLANDFGFDYEAWLAADGIGATGSVKDG
RRLAEATGPMAWREAWKDRLLAVDARGRNAYLAALVLGDGSGLGRDDWDMLQDTGTLHLMVISGSHISLLGGLLYALVAG
LARLGAWPARVPWLPCACAAALAGAWGYGWIAGLQVPALRACLMLSMVLLWRLHFRRQGVWLPLLGALLVVLLVDPLVSL
TPGFWLSFAAVALLVYGFAGRLGRGAGWLAWGRAQWLMALGLAPVLLALGLPLSPAGALANLIAVPCVELLVVPLALVGS
LLLWLPAVGEGLLWLAGGVLDVLLGLLGRLSLYSPAWHPMAPPPWSIALALFGALLCLAPAGLPLRPLGLALLLPMFWPH
SSAPPHGHAEVRVLDVGQGLSVLIRTRQHTWLYDAGPRRGDFDLGEVAVLPTLRGLGIERLDMLLLSHADNDHAGGARSV
AAAVPVARIISGEPGRLPDSLPAGPCGNEVWQLDGVRFSTWQWPDATDSNGRSCVLYVEAGGESLLLTGDLPAAGEVAWL
AAHPGLGADWLLAGHHGSRSASSAAFVRQLAPRAALVSRSRHNAHGHPSSEVLQRFAEQGTKVHDVAREGALRVLLGQRG
TLRGVRENAGFWREK

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=920532 VK748_RS00130 WP_324711448.1 22839..25046(-) (comA) [Pseudomonas citronellolis strain G5.41a]
ATGATGGCGCTGGCCTGCGGCCTGTTGCTGCTGCGTTTCCTGCCCCAGCTGCCACCCTTGGCGGCCCTGCTGCCATTGGT
CGGAATGGCGCTGCTGTGCCTGTATCGGCGACATCACGCGGTGGCGCTCTTCCTGCTCGGCTTTGCCTGGGCCTGCCTGT
TCGCCCATGACTCGTGGGAAGGGCGCCTGGCTCCCGAGCTGGACGGGCGGACGCTTTGGCTGGAAGGGCAGGTTGCCGGC
CTGCCGGCTGCCGCGGATGGCATCGTCCGCTTCGAGCTGGAGGACGTCCAGGCGCGCCTGGACCTGCCCGGGCGCATCCG
CGTGTCCTGGTACGGCGGGCCGGAGGTGCGGGCCGGGGAGCGCTGGCGCCTGGCGGTCACCCTGCGCCGCCCCCATGGCC
TGGCCAACGATTTCGGCTTCGACTACGAGGCCTGGCTGGCGGCCGACGGCATAGGCGCCACCGGCAGCGTCAAGGATGGC
CGGCGCCTGGCCGAGGCCACGGGACCGATGGCTTGGCGCGAAGCCTGGAAGGACCGGCTGCTGGCGGTGGATGCCCGGGG
ACGCAACGCCTACCTGGCGGCCCTGGTCCTCGGCGACGGCAGCGGCCTGGGCCGGGACGACTGGGACATGCTGCAGGACA
CCGGCACCCTGCACCTGATGGTGATCTCCGGCTCGCACATCTCCCTGCTGGGCGGCTTGCTCTACGCCCTGGTGGCGGGT
CTGGCGCGCCTGGGAGCCTGGCCGGCGCGCGTGCCCTGGCTGCCCTGCGCCTGTGCCGCCGCACTGGCTGGCGCCTGGGG
CTATGGCTGGATCGCCGGGCTGCAGGTGCCGGCGCTGCGTGCCTGCCTGATGCTCAGCATGGTGCTGCTGTGGCGCCTGC
ACTTTCGTCGCCAGGGCGTATGGCTGCCGCTGCTCGGCGCTCTGCTGGTGGTGCTGCTGGTCGATCCATTGGTCAGCCTG
ACGCCCGGCTTCTGGCTGTCCTTCGCCGCCGTGGCGCTGCTCGTCTACGGCTTCGCCGGGCGCCTGGGGCGGGGGGCCGG
CTGGCTGGCCTGGGGGCGCGCGCAGTGGCTCATGGCTCTCGGCCTGGCGCCGGTGTTGCTGGCCCTGGGCCTGCCGCTGA
GTCCCGCCGGCGCGCTGGCGAACCTGATCGCGGTGCCCTGTGTCGAGTTGCTGGTGGTGCCCCTGGCGCTGGTCGGCAGC
CTGCTGCTGTGGCTGCCGGCGGTGGGCGAGGGGCTGCTGTGGCTGGCGGGTGGCGTGCTCGATGTTCTGCTGGGCCTGCT
CGGGCGCCTGTCGCTGTATTCCCCGGCCTGGCACCCCATGGCGCCGCCGCCCTGGAGCATCGCCCTGGCCCTGTTCGGCG
CGCTGCTGTGCCTGGCGCCGGCCGGGCTGCCGCTGCGTCCGCTGGGCCTGGCGTTGCTGTTGCCGATGTTCTGGCCGCAT
TCCAGCGCGCCGCCCCATGGCCATGCCGAAGTGCGGGTGCTGGACGTGGGCCAGGGGCTGTCCGTGCTGATCCGCACCCG
CCAGCACACCTGGCTATACGACGCCGGACCGCGCCGGGGCGATTTCGACCTCGGCGAGGTGGCGGTGCTGCCGACTCTCC
GTGGCCTGGGCATCGAGCGCCTGGATATGCTGCTGCTCAGCCACGCCGACAATGACCACGCCGGCGGCGCCCGCTCGGTG
GCGGCGGCCGTGCCGGTAGCGCGGATCATCAGCGGCGAGCCCGGGCGTTTGCCGGACAGCCTGCCTGCCGGCCCCTGCGG
CAACGAGGTATGGCAGCTGGACGGCGTGCGCTTCTCCACCTGGCAGTGGCCCGATGCGACGGACAGCAACGGCCGCTCCT
GTGTGCTGTACGTCGAGGCCGGCGGCGAGAGCCTGCTGCTCACCGGCGACCTGCCGGCCGCAGGCGAGGTCGCCTGGCTG
GCCGCCCATCCTGGGCTCGGCGCCGACTGGCTGCTGGCCGGCCACCATGGCAGCCGCAGCGCCTCTTCCGCGGCCTTCGT
CAGGCAACTGGCGCCCCGCGCGGCGCTGGTTTCCCGCTCGCGGCACAACGCCCATGGCCATCCGTCCAGCGAGGTATTGC
AACGCTTTGCCGAGCAGGGGACGAAGGTGCACGATGTGGCCCGGGAGGGCGCCCTGCGCGTGCTCCTGGGCCAGCGTGGA
ACGCTGCGCGGCGTGCGCGAAAATGCCGGATTCTGGAGGGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(495-677)

Competence protein (Competence)

(195-458)

Domain of unknown function (DUF4131) (DUF4131)

(16-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.361

97.959

0.562
  comA Ralstonia pseudosolanacearum GMI1000

35.441

100

0.366