Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VK748_RS00125 Genome accession   NZ_CP141948
Coordinates   22131..22766 (-) Length   211 a.a.
NCBI ID   WP_009621398.1    Uniprot ID   A0A1A5CYN3
Organism   Pseudomonas citronellolis strain G5.41a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17131..27766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK748_RS00095 (VK748_00095) murB 18202..19221 (-) 1020 WP_324710190.1 UDP-N-acetylmuramate dehydrogenase -
  VK748_RS00100 (VK748_00100) - 19218..19679 (-) 462 WP_324710191.1 low molecular weight protein-tyrosine-phosphatase -
  VK748_RS00105 (VK748_00105) kdsB 19679..20443 (-) 765 WP_324710192.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VK748_RS00110 (VK748_00110) - 20464..20649 (-) 186 WP_009621404.1 Trm112 family protein -
  VK748_RS00115 (VK748_00115) lpxK 20690..21688 (-) 999 WP_043267277.1 tetraacyldisaccharide 4'-kinase -
  VK748_RS00120 (VK748_00120) - 21688..22134 (-) 447 WP_009621400.1 ExbD/TolR family protein -
  VK748_RS00125 (VK748_00125) exbB 22131..22766 (-) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VK748_RS00130 (VK748_00130) comA 22839..25046 (-) 2208 WP_324711448.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VK748_RS00135 (VK748_00135) - 25183..25713 (+) 531 WP_064582526.1 DUF2062 domain-containing protein -
  VK748_RS00140 (VK748_00140) - 26300..27550 (-) 1251 WP_324710193.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.12 Da        Isoelectric Point: 8.0527

>NTDB_id=920531 VK748_RS00125 WP_009621398.1 22131..22766(-) (exbB) [Pseudomonas citronellolis strain G5.41a]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=920531 VK748_RS00125 WP_009621398.1 22131..22766(-) (exbB) [Pseudomonas citronellolis strain G5.41a]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGCTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAGCTCAAGGCGTCTTCCCCGCTGGGCGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGGCCGAGTGATCCACGAGATGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCCTCC
GGCCTGATCGTGGCCATCCCGGCCGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGATGAGCTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGACCGCGAGGTCGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806