Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VK847_RS17360 Genome accession   NZ_CP141899
Coordinates   3803230..3805446 (-) Length   738 a.a.
NCBI ID   WP_324708163.1    Uniprot ID   -
Organism   Pseudomonas fragi strain LKYC.ZH     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3798230..3810446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK847_RS17325 (VK847_17325) - 3798500..3799111 (-) 612 WP_169844637.1 hypothetical protein -
  VK847_RS17330 (VK847_17330) murB 3799127..3800146 (-) 1020 WP_324708161.1 UDP-N-acetylmuramate dehydrogenase -
  VK847_RS17335 (VK847_17335) kdsB 3800143..3800907 (-) 765 WP_324708162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VK847_RS17340 (VK847_17340) - 3800904..3801089 (-) 186 WP_086796064.1 Trm112 family protein -
  VK847_RS17345 (VK847_17345) lpxK 3801111..3802121 (-) 1011 WP_095005484.1 tetraacyldisaccharide 4'-kinase -
  VK847_RS17350 (VK847_17350) - 3802121..3802549 (-) 429 WP_016779937.1 ExbD/TolR family protein -
  VK847_RS17355 (VK847_17355) exbB 3802546..3803181 (-) 636 WP_029611293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VK847_RS17360 (VK847_17360) comA 3803230..3805446 (-) 2217 WP_324708163.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VK847_RS17365 (VK847_17365) - 3805581..3806096 (+) 516 WP_016779933.1 DUF2062 domain-containing protein -
  VK847_RS17370 (VK847_17370) - 3806141..3806920 (-) 780 WP_016779932.1 ABC transporter permease -
  VK847_RS17375 (VK847_17375) - 3806917..3807849 (-) 933 WP_016779931.1 ABC transporter ATP-binding protein -
  VK847_RS17380 (VK847_17380) - 3807983..3808609 (-) 627 WP_324708164.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79807.96 Da        Isoelectric Point: 10.3257

>NTDB_id=920438 VK847_RS17360 WP_324708163.1 3803230..3805446(-) (comA) [Pseudomonas fragi strain LKYC.ZH]
MYTGMLALAAGLMTLRFLPVLPSVGWLLLMLVAGLLLLACRAWPLGLFVLGLSWACVQGQRALDDRLADSFDGRTLWVEG
RVIGLPQQSGKSVRFELQGAKSRHGALPAIIRLSWYGGPSVNSGERWRLAVKLKKPKGLLNPQGFDFEAWLLAQRIGATG
TVKQGQLQQAASHAWRDGLRQRLSGVDAQGRGAWLAALVLGDGSGLSRDDWALLQATGTVHLLVISGQHIGLFAGLIYGL
VALLARYGLWPGFLPWLPWACALAFIGATGYGLLAGFEVPVQRACAMLGLVLAWRLWFRQLGVWLPFLLALIAVLIIEPL
ASLRAGLWLSFGAVAVLLFTFSGRLGAWGWRAMWLRPQGLIALGLFPVLWILDLPISLTGPLANLLAVPWISLAVLPTAL
LGTLLLPVPWLGENLLWLSGGLIDVLVQVLSQLADVFKPWLPASVPVYLWLLSAGGVLILLLPAGLVLRPLGWPLVLLAL
FAPREPIPHGQVEVLQLDVGQGLAIALRTRNHTLLYDAGPKFGDLDQGERVVVPVLRSLGVGALDLMLLSHADADHAGGA
LAVQRAINVARVVSGDVPGLAPQLRAQPCVSGHSWEWDGVRFALWQWAGASDSNQKSCVLQVQAGDERLLLTGDIDARAE
RELLKSPLAVPTRWLQAPHHGSKTSSSMVFLKALAPEIVLISRGHGNSFGHPHPQVMARYQALGVQVLDSAEQGAVKFRL
GVSGKAQSMRDQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=920438 VK847_RS17360 WP_324708163.1 3803230..3805446(-) (comA) [Pseudomonas fragi strain LKYC.ZH]
ATGTACACAGGGATGTTGGCGCTGGCAGCGGGCCTGATGACGCTGCGCTTTTTACCGGTTTTACCGTCTGTCGGGTGGTT
GCTGCTGATGCTGGTGGCGGGGCTGTTGCTGTTGGCCTGCAGGGCCTGGCCGCTGGGGCTTTTTGTGCTTGGGTTGAGCT
GGGCCTGCGTGCAGGGGCAAAGGGCGCTGGATGATCGTCTGGCGGATTCATTCGACGGGCGTACCCTCTGGGTTGAGGGG
CGTGTTATCGGGTTGCCGCAGCAGTCCGGCAAGTCCGTTCGTTTTGAGTTGCAAGGGGCAAAGTCGCGGCACGGCGCGCT
GCCCGCGATCATCAGGCTGAGCTGGTATGGCGGGCCCTCCGTGAACAGCGGCGAGCGCTGGCGGTTGGCGGTCAAACTCA
AGAAGCCCAAGGGCTTGCTCAACCCTCAGGGGTTTGATTTTGAAGCCTGGTTACTGGCGCAGCGCATCGGAGCCACCGGC
ACGGTCAAGCAGGGGCAACTGCAGCAAGCCGCCAGCCACGCCTGGCGTGACGGCTTGCGCCAACGCCTGTCAGGGGTTGA
TGCCCAAGGCCGGGGCGCCTGGCTGGCAGCGCTGGTCCTGGGTGACGGGTCGGGCTTGAGCCGGGATGACTGGGCGCTGC
TGCAGGCGACCGGCACGGTGCATTTGCTGGTGATCTCGGGGCAGCATATCGGCCTGTTTGCCGGCTTGATCTACGGGTTG
GTCGCCCTGCTGGCGCGTTATGGGCTGTGGCCGGGCTTTTTGCCGTGGCTGCCCTGGGCGTGTGCCCTGGCGTTTATCGG
CGCCACAGGCTATGGCCTGCTGGCCGGCTTTGAAGTACCAGTACAGCGGGCATGCGCGATGCTCGGTCTGGTGCTGGCAT
GGCGTTTGTGGTTTCGCCAGCTGGGGGTGTGGCTGCCTTTTTTGCTGGCGCTCATTGCGGTGTTGATCATCGAACCGCTG
GCGAGTTTGCGGGCGGGGTTGTGGTTGTCATTCGGTGCCGTGGCGGTGCTGCTTTTTACCTTCAGCGGCCGTTTGGGGGC
GTGGGGGTGGCGGGCCATGTGGCTGCGCCCTCAGGGCCTGATAGCCCTGGGCTTGTTCCCGGTGCTGTGGATCCTCGATT
TGCCCATCAGCCTGACCGGGCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGCCTGGCGGTGTTGCCCACGGCACTG
CTGGGGACCTTGCTGCTGCCTGTGCCCTGGCTGGGGGAAAACCTGCTGTGGTTATCGGGTGGCCTGATTGATGTGCTGGT
GCAGGTGTTGAGTCAGCTGGCCGATGTGTTCAAGCCCTGGTTGCCCGCATCGGTGCCGGTTTACCTTTGGTTGTTGAGTG
CTGGCGGAGTGCTGATCCTGTTGTTGCCAGCGGGGTTGGTGTTGCGGCCGTTGGGCTGGCCGCTGGTGCTTCTGGCGCTG
TTCGCGCCCCGGGAGCCAATCCCCCACGGTCAGGTCGAGGTGCTGCAGCTGGATGTCGGCCAGGGCCTGGCCATTGCTTT
GCGTACCCGCAATCACACGCTGCTGTATGACGCTGGCCCCAAGTTCGGCGATCTGGATCAGGGTGAGCGGGTGGTGGTGC
CGGTTTTGCGCTCTCTGGGCGTTGGTGCGCTGGATTTGATGCTGCTCAGCCATGCTGACGCCGATCATGCGGGTGGCGCG
CTGGCAGTGCAGCGCGCGATCAACGTGGCGCGGGTGGTCAGCGGTGATGTACCTGGGCTGGCGCCGCAGTTGCGGGCGCA
ACCCTGTGTCAGTGGCCACAGCTGGGAGTGGGACGGGGTGCGGTTTGCACTCTGGCAGTGGGCGGGGGCGAGCGACAGTA
ATCAAAAGTCCTGCGTGCTACAGGTGCAGGCTGGCGATGAACGGTTGCTGCTGACCGGGGATATCGACGCCAGGGCCGAG
CGTGAGTTGCTGAAAAGCCCGTTGGCCGTGCCCACCCGTTGGTTGCAGGCCCCGCACCACGGCAGCAAGACTTCGTCGTC
GATGGTGTTTCTCAAGGCGCTGGCGCCTGAAATCGTGCTGATATCCCGGGGGCATGGTAATAGCTTCGGTCATCCCCATC
CGCAGGTGATGGCCCGGTATCAGGCGCTGGGGGTGCAGGTACTGGACAGCGCCGAGCAGGGTGCGGTGAAATTTCGTCTC
GGGGTGTCGGGCAAGGCTCAAAGCATGCGTGACCAACGCCGCTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-461)

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.832

97.425

0.573
  comA Ralstonia pseudosolanacearum GMI1000

34.231

100

0.362