Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VK847_RS17355 Genome accession   NZ_CP141899
Coordinates   3802546..3803181 (-) Length   211 a.a.
NCBI ID   WP_029611293.1    Uniprot ID   -
Organism   Pseudomonas fragi strain LKYC.ZH     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3797546..3808181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK847_RS17325 (VK847_17325) - 3798500..3799111 (-) 612 WP_169844637.1 hypothetical protein -
  VK847_RS17330 (VK847_17330) murB 3799127..3800146 (-) 1020 WP_324708161.1 UDP-N-acetylmuramate dehydrogenase -
  VK847_RS17335 (VK847_17335) kdsB 3800143..3800907 (-) 765 WP_324708162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VK847_RS17340 (VK847_17340) - 3800904..3801089 (-) 186 WP_086796064.1 Trm112 family protein -
  VK847_RS17345 (VK847_17345) lpxK 3801111..3802121 (-) 1011 WP_095005484.1 tetraacyldisaccharide 4'-kinase -
  VK847_RS17350 (VK847_17350) - 3802121..3802549 (-) 429 WP_016779937.1 ExbD/TolR family protein -
  VK847_RS17355 (VK847_17355) exbB 3802546..3803181 (-) 636 WP_029611293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VK847_RS17360 (VK847_17360) comA 3803230..3805446 (-) 2217 WP_324708163.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VK847_RS17365 (VK847_17365) - 3805581..3806096 (+) 516 WP_016779933.1 DUF2062 domain-containing protein -
  VK847_RS17370 (VK847_17370) - 3806141..3806920 (-) 780 WP_016779932.1 ABC transporter permease -
  VK847_RS17375 (VK847_17375) - 3806917..3807849 (-) 933 WP_016779931.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23020.24 Da        Isoelectric Point: 6.8765

>NTDB_id=920437 VK847_RS17355 WP_029611293.1 3802546..3803181(-) (exbB) [Pseudomonas fragi strain LKYC.ZH]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNTLGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAILAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDDLVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=920437 VK847_RS17355 WP_029611293.1 3802546..3803181(-) (exbB) [Pseudomonas fragi strain LKYC.ZH]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATTTGCTCGGCCAGGTCTGGGTCTGGATCAAAGACA
AACAGATGGACAAGGAAAAACTCAAGCAGCTGCGCGCCGACTCACCCCTGGGGGAGATTCTCGCTGCCGGCCTGGCCAAC
TCCCGTCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAGGCCGCCGCGCGGGTCATTCACGAGCTTGAGCGCTACCT
CAATACCCTGGGCACCATCGCGGCAATGGCGCCGTTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAATGCTGCCATCCTGGCGGGCGGTATTTCCAAGGCGCTGATCACCACGGCT
GCAGGCCTGATGGTGGGTATCCCGGCGGTATTCTTCCATCGTTTCCTGCAGCGTCGCGTTGACGACTTGGTGGTCGGCAT
GGAGCAGGAGGCAATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGACATGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844