Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV50_RS13140 Genome accession   NZ_AP025487
Coordinates   2949800..2950432 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio fortis strain LMG 21557     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2944800..2955432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS13120 - 2946685..2947173 (+) 489 WP_261903230.1 TIGR02444 family protein -
  OCV50_RS13125 - 2947329..2948306 (+) 978 WP_239841899.1 hydrolase -
  OCV50_RS13130 - 2948399..2948611 (+) 213 WP_239841900.1 YheU family protein -
  OCV50_RS13135 - 2948689..2949558 (+) 870 WP_032550028.1 phosphoribulokinase -
  OCV50_RS13140 crp 2949800..2950432 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV50_RS13145 - 2950629..2951420 (-) 792 WP_261903231.1 DUF1338 domain-containing protein -
  OCV50_RS13150 astD 2951624..2953081 (-) 1458 WP_261903232.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV50_RS13155 astA 2953114..2954133 (-) 1020 WP_261904162.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=92019 OCV50_RS13140 WP_004410522.1 2949800..2950432(+) (crp) [Vibrio fortis strain LMG 21557]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=92019 OCV50_RS13140 WP_004410522.1 2949800..2950432(+) (crp) [Vibrio fortis strain LMG 21557]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGTACTCTGATTCACGCTGGTGAAAAGGCAGAGACCCTGTACTACATCGTTAAGGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTTATCGGCGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGCCTTTCTGCGCAAATGGCTAGCCGTCTTCAAGTAACCAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTTACTGGTCGTATCGCACAAACGCTACTAAACCTAGCGAAACAACCTGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGTCAGATTGTTGGCTGTTCACGTGAGACTGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAAAACCTAATTTCTGCTCACGGTAAAACTATTGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment