Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   VDS57_RS06725 Genome accession   NZ_CP141839
Coordinates   1258328..1259485 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain PN1236     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253328..1264485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS06695 (VDS57_06695) yvyF 1253581..1254000 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  VDS57_RS06700 (VDS57_06700) comFC 1254073..1254795 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  VDS57_RS06705 (VDS57_06705) comFB 1254759..1255055 (-) 297 WP_003227989.1 late competence protein ComFB -
  VDS57_RS06710 (VDS57_06710) comFA 1255115..1256506 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  VDS57_RS06715 (VDS57_06715) fakBA 1256613..1257458 (-) 846 WP_014481053.1 DegV family protein -
  VDS57_RS06720 (VDS57_06720) degU 1257556..1258245 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  VDS57_RS06725 (VDS57_06725) degS 1258328..1259485 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  VDS57_RS06730 (VDS57_06730) - 1259702..1260355 (+) 654 WP_014481055.1 YigZ family protein -
  VDS57_RS06735 (VDS57_06735) - 1260355..1261347 (+) 993 WP_014481056.1 LCP family protein -
  VDS57_RS06740 (VDS57_06740) - 1261945..1262409 (+) 465 WP_228394534.1 hypothetical protein -
  VDS57_RS06745 (VDS57_06745) - 1262460..1262912 (+) 453 WP_014481058.1 hypothetical protein -
  VDS57_RS06750 (VDS57_06750) - 1262988..1263767 (+) 780 WP_014481059.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=920140 VDS57_RS06725 WP_003227983.1 1258328..1259485(-) (degS) [Bacillus subtilis strain PN1236]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=920140 VDS57_RS06725 WP_003227983.1 1258328..1259485(-) (degS) [Bacillus subtilis strain PN1236]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGGATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1