Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   VDS57_RS06700 Genome accession   NZ_CP141839
Coordinates   1254073..1254795 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249073..1259795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS06665 (VDS57_06665) fliW 1249213..1249644 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  VDS57_RS06670 (VDS57_06670) yviE 1249665..1250240 (-) 576 WP_014481045.1 DUF6470 family protein -
  VDS57_RS06675 (VDS57_06675) flgL 1250287..1251183 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  VDS57_RS06680 (VDS57_06680) flgK 1251194..1252717 (-) 1524 WP_324271437.1 flagellar hook-associated protein FlgK -
  VDS57_RS06685 (VDS57_06685) flgN 1252736..1253218 (-) 483 WP_014481048.1 flagellar protein FlgN -
  VDS57_RS06690 (VDS57_06690) flgM 1253234..1253500 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  VDS57_RS06695 (VDS57_06695) yvyF 1253581..1254000 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  VDS57_RS06700 (VDS57_06700) comFC 1254073..1254795 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  VDS57_RS06705 (VDS57_06705) comFB 1254759..1255055 (-) 297 WP_003227989.1 late competence protein ComFB -
  VDS57_RS06710 (VDS57_06710) comFA 1255115..1256506 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  VDS57_RS06715 (VDS57_06715) fakBA 1256613..1257458 (-) 846 WP_014481053.1 DegV family protein -
  VDS57_RS06720 (VDS57_06720) degU 1257556..1258245 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  VDS57_RS06725 (VDS57_06725) degS 1258328..1259485 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=920137 VDS57_RS06700 WP_014481051.1 1254073..1254795(-) (comFC) [Bacillus subtilis strain PN1236]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=920137 VDS57_RS06700 WP_014481051.1 1254073..1254795(-) (comFC) [Bacillus subtilis strain PN1236]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992