Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   VDS57_RS06720 Genome accession   NZ_CP141839
Coordinates   1257556..1258245 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252556..1263245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS06685 (VDS57_06685) flgN 1252736..1253218 (-) 483 WP_014481048.1 flagellar protein FlgN -
  VDS57_RS06690 (VDS57_06690) flgM 1253234..1253500 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  VDS57_RS06695 (VDS57_06695) yvyF 1253581..1254000 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  VDS57_RS06700 (VDS57_06700) comFC 1254073..1254795 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  VDS57_RS06705 (VDS57_06705) comFB 1254759..1255055 (-) 297 WP_003227989.1 late competence protein ComFB -
  VDS57_RS06710 (VDS57_06710) comFA 1255115..1256506 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  VDS57_RS06715 (VDS57_06715) fakBA 1256613..1257458 (-) 846 WP_014481053.1 DegV family protein -
  VDS57_RS06720 (VDS57_06720) degU 1257556..1258245 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  VDS57_RS06725 (VDS57_06725) degS 1258328..1259485 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  VDS57_RS06730 (VDS57_06730) - 1259702..1260355 (+) 654 WP_014481055.1 YigZ family protein -
  VDS57_RS06735 (VDS57_06735) - 1260355..1261347 (+) 993 WP_014481056.1 LCP family protein -
  VDS57_RS06740 (VDS57_06740) - 1261945..1262409 (+) 465 WP_228394534.1 hypothetical protein -
  VDS57_RS06745 (VDS57_06745) - 1262460..1262912 (+) 453 WP_014481058.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=920139 VDS57_RS06720 WP_014481054.1 1257556..1258245(-) (degU) [Bacillus subtilis strain PN1236]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=920139 VDS57_RS06720 WP_014481054.1 1257556..1258245(-) (degU) [Bacillus subtilis strain PN1236]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996