NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	VA212_RS04905	Genome accession	NZ_CP141838
Coordinates	1010934..1011734 (-)	Length	266 a.a.
NCBI ID	WP_220876815.1	Uniprot ID	-
Organism	Helicobacter pylori strain P07928
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1005934..1016734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA212_RS04865	-	1006782..1007568 (-)	787	Protein_940	hypothetical protein	-
VA212_RS04870	-	1007568..1007949 (-)	382	Protein_941	DUF1294 domain-containing protein	-
VA212_RS04875	-	1008280..1008441 (-)	162	WP_231207324.1	lysozyme	-
VA212_RS04880	-	1008461..1008955 (-)	495	WP_324659681.1	glycoside hydrolase family protein	-
VA212_RS04885	-	1008966..1009526 (-)	561	WP_324659683.1	hypothetical protein	-
VA212_RS04890	-	1009510..1009848 (-)	339	WP_015087093.1	hypothetical protein	-
VA212_RS04895	-	1010071..1010475 (-)	405	WP_324659685.1	tetratricopeptide repeat protein	-
VA212_RS04900	dprB	1010533..1010937 (-)	405	WP_324659686.1	Holliday junction resolvase RuvX	Machinery gene
VA212_RS04905	dprA	1010934..1011734 (-)	801	WP_220876815.1	DNA-processing protein DprA	Machinery gene
VA212_RS04910	minE	1011746..1011979 (-)	234	WP_324659688.1	cell division topological specificity factor MinE	-
VA212_RS04915	minD	1011976..1012782 (-)	807	WP_050835089.1	septum site-determining protein MinD	-
VA212_RS04920	ilvC	1012807..1013799 (-)	993	WP_324659689.1	ketol-acid reductoisomerase	-
VA212_RS04930	-	1014048..1014830 (+)	783	WP_324659690.1	NAD+ synthase	-
VA212_RS04935	-	1014827..1015765 (+)	939	WP_324659691.1	tetraacyldisaccharide 4'-kinase	-
VA212_RS04940	pseH	1015698..1016240 (-)	543	WP_324659692.1	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	-

Sequence

Protein

Download Length: 266 a.a. Molecular weight: 29804.79 Da Isoelectric Point: 8.5925

                                >NTDB_id=920097 VA212_RS04905 WP_220876815.1 1010934..1011734(-) (dprA) [Helicobacter pylori strain P07928]

MKSNFQYSVLENIPKVFDILKDPPKKLYCVGDIKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV

DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG

SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEIKDEFLEYCAKNPSYEEAY

LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide

Download Length: 801 bp

                                >NTDB_id=920097 VA212_RS04905 WP_220876815.1 1010934..1011734(-) (dprA) [Helicobacter pylori strain P07928]

ATGAAAAGCAACTTCCAATACAGCGTGCTAGAGAATATCCCTAAAGTCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT

CTATTGTGTGGGCGATATAAAGCTTTTAGATGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA

GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGTGGAGGAGCGTTAGGCGTG

GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTAATCTATCCCACGAA

CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCCGTTAAAG

GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC

TCTATGAGTAGCGCTAGATTAGCCCAAAAATACCAGAAACCCTTATTTGTTTTGCCTCAGCGCCTGAATGAGAGTGATGG

CACGAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC

ACCATTTAAAAGAAATGCCTGAAATCAAAGACGAATTTTTAGAATATTGCGCCAAAAACCCGAGCTATGAAGAGGCGTAT

CTCAAATTTGGGGACAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATATCGTGGTGTTAGCGTG

A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(14-197)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Helicobacter pylori 26695	95.865	100	0.959
dprA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	48.673	84.962	0.414

Detailed information NTG0920097