Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   VA212_RS04900 Genome accession   NZ_CP141838
Coordinates   1010533..1010937 (-) Length   134 a.a.
NCBI ID   WP_324659686.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1005533..1015937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA212_RS04860 - 1005690..1006792 (-) 1103 Protein_939 hypothetical protein -
  VA212_RS04865 - 1006782..1007568 (-) 787 Protein_940 hypothetical protein -
  VA212_RS04870 - 1007568..1007949 (-) 382 Protein_941 DUF1294 domain-containing protein -
  VA212_RS04875 - 1008280..1008441 (-) 162 WP_231207324.1 lysozyme -
  VA212_RS04880 - 1008461..1008955 (-) 495 WP_324659681.1 glycoside hydrolase family protein -
  VA212_RS04885 - 1008966..1009526 (-) 561 WP_324659683.1 hypothetical protein -
  VA212_RS04890 - 1009510..1009848 (-) 339 WP_015087093.1 hypothetical protein -
  VA212_RS04895 - 1010071..1010475 (-) 405 WP_324659685.1 tetratricopeptide repeat protein -
  VA212_RS04900 dprB 1010533..1010937 (-) 405 WP_324659686.1 Holliday junction resolvase RuvX Machinery gene
  VA212_RS04905 dprA 1010934..1011734 (-) 801 WP_220876815.1 DNA-processing protein DprA Machinery gene
  VA212_RS04910 minE 1011746..1011979 (-) 234 WP_324659688.1 cell division topological specificity factor MinE -
  VA212_RS04915 minD 1011976..1012782 (-) 807 WP_050835089.1 septum site-determining protein MinD -
  VA212_RS04920 ilvC 1012807..1013799 (-) 993 WP_324659689.1 ketol-acid reductoisomerase -
  VA212_RS04930 - 1014048..1014830 (+) 783 WP_324659690.1 NAD+ synthase -
  VA212_RS04935 - 1014827..1015765 (+) 939 WP_324659691.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15311.98 Da        Isoelectric Point: 9.4968

>NTDB_id=920096 VA212_RS04900 WP_324659686.1 1010533..1010937(-) (dprB) [Helicobacter pylori strain P07928]
MILACDVGLKRIGIAMLLNGVILPLKAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEYLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=920096 VA212_RS04900 WP_324659686.1 1010533..1010937(-) (dprB) [Helicobacter pylori strain P07928]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAAAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGAAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGTATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94