Detailed information NTG0920090

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: VA212_RS00210
• Genome accession: NZ_CP141838
• Coordinates: 39701..40837 (+)
• Length: 378 a.a.
• NCBI ID: WP_324660516.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P07928
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34701..45837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA212_RS00175	panD	35143..35493 (+)	351	WP_324660508.1	aspartate 1-decarboxylase	-
VA212_RS00180	-	35504..35797 (+)	294	WP_324660509.1	YbaB/EbfC family nucleoid-associated protein	-
VA212_RS00185	-	35797..36792 (+)	996	WP_324661395.1	PDZ domain-containing protein	-
VA212_RS00190	comB6	36798..37853 (+)	1056	WP_324660511.1	P-type conjugative transfer protein TrbL	Machinery gene
VA212_RS00195	comB7	37869..37994 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
VA212_RS00200	comB8	37991..38734 (+)	744	WP_000660524.1	type IV secretion system protein	Machinery gene
VA212_RS00205	comB9	38734..39708 (+)	975	WP_324660513.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
VA212_RS00210	comB10	39701..40837 (+)	1137	WP_324660516.1	DNA type IV secretion system protein ComB10	Machinery gene
VA212_RS00215	-	40907..42319 (+)	1413	WP_324660518.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
VA212_RS00220	gmd	42333..43478 (+)	1146	WP_180422468.1	GDP-mannose 4,6-dehydratase	-
VA212_RS00225	-	43471..44403 (+)	933	WP_324660522.1	GDP-L-fucose synthase	-
VA212_RS00230	hypE	44658..45656 (-)	999	WP_324660523.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42009.58 Da
• Isoelectric Point: 9.9722

>NTDB_id=920090 VA212_RS00210 WP_324660516.1 39701..40837(+) (comB10) [Helicobacter pylori strain P07928]
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFASPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRGNEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=920090 VA212_RS00210 WP_324660516.1 39701..40837(+) (comB10) [Helicobacter pylori strain P07928]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACCCAAAACCCACAGCCAACTAATACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCTAAAGAAGAAACTTTTGCTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTTTTTGGGGATTATCTTTTGTTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCCATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGGGAATGAAGTTATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96