Detailed information NTG0920086

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: VA212_RS00190
• Genome accession: NZ_CP141838
• Coordinates: 36798..37853 (+)
• Length: 351 a.a.
• NCBI ID: WP_324660511.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P07928
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31798..42853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA212_RS00155	-	31891..32076 (-)	186	WP_324660487.1	hypothetical protein	-
VA212_RS00160	-	32223..32636 (+)	414	WP_001023005.1	universal stress protein	-
VA212_RS00165	-	32656..32931 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
VA212_RS00170	-	32931..35153 (+)	2223	WP_324660506.1	ATP-dependent Clp protease ATP-binding subunit	-
VA212_RS00175	panD	35143..35493 (+)	351	WP_324660508.1	aspartate 1-decarboxylase	-
VA212_RS00180	-	35504..35797 (+)	294	WP_324660509.1	YbaB/EbfC family nucleoid-associated protein	-
VA212_RS00185	-	35797..36792 (+)	996	WP_324661395.1	PDZ domain-containing protein	-
VA212_RS00190	comB6	36798..37853 (+)	1056	WP_324660511.1	P-type conjugative transfer protein TrbL	Machinery gene
VA212_RS00195	comB7	37869..37994 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
VA212_RS00200	comB8	37991..38734 (+)	744	WP_000660524.1	type IV secretion system protein	Machinery gene
VA212_RS00205	comB9	38734..39708 (+)	975	WP_324660513.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
VA212_RS00210	comB10	39701..40837 (+)	1137	WP_324660516.1	DNA type IV secretion system protein ComB10	Machinery gene
VA212_RS00215	-	40907..42319 (+)	1413	WP_324660518.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39935.94 Da
• Isoelectric Point: 8.8165

>NTDB_id=920086 VA212_RS00190 WP_324660511.1 36798..37853(+) (comB6) [Helicobacter pylori strain P07928]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALVFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIVPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=920086 VA212_RS00190 WP_324660511.1 36798..37853(+) (comB6) [Helicobacter pylori strain P07928]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGTGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGTGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAGCTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96